PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100260800051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family TALE
Protein Properties Length: 313aa    MW: 35916.7 Da    PI: 6.9152
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100260800051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.21.2e-072142472154
                                   HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                      Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                   k +yp++e++++L +++gL+ +q+ +WF N+R +
  Ote100260800051|100260800051 214 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 247
                                   469*****************************87 PP
2ELK26.41.6e-09168189122
                           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                   ELKh+L+++Y+++L ++++E++
  Ote100260800051|100260800051 168 ELKHELKQGYKEKLFDIREEIL 189
                                   9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012559.7E-18246IPR005540KNOX1
PfamPF037906.0E-17445IPR005540KNOX1
SMARTSM012564.3E-2556111IPR005541KNOX2
PfamPF037917.1E-1960110IPR005541KNOX2
PROSITE profilePS512139.987168188IPR005539ELK domain
SMARTSM011880.0062168189IPR005539ELK domain
PROSITE profilePS5007111.71188251IPR001356Homeobox domain
SuperFamilySSF466893.34E-16190254IPR009057Homeodomain-like
SMARTSM003895.2E-11190255IPR001356Homeobox domain
CDDcd000861.36E-11191252No hitNo description
Gene3DG3DSA:1.10.10.601.2E-25195252IPR009057Homeodomain-like
PfamPF059207.8E-18208247IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
AGICKADILN HPLYEQLLST HVACLRIATP VDQLQRIDAQ LAQSHQVVAK YSVVGNGQHP  60
LDDKDLDQFM THYVLLLSSF KEQLQQHVRV HAMEAVMACW ELEQSLQSLT GVAPGEGSGA  120
TMSDDDEDQA DSEMNLFDES LDGADNMGFG PLVPTESERS LMERVKHELK HELKQGYKEK  180
LFDIREEILR KRRAGKLPGD TTSMLKAWWQ SHSKWPYPTE EDKARLVQET GLQLKQINNW  240
FINQRKRNWH SNPSSSSSQK SKRKRXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXIKLKF GIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A4e-12191255872Homeobox protein PKNOX1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtIsoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084050.10.0homeobox protein knotted-1-like LET12 isoform X2
SwissprotQ0J6N41e-160KNOSD_ORYSJ; Homeobox protein knotted-1-like 13
TrEMBLA0A2Z7CAA71e-175A0A2Z7CAA7_9LAMI; Homeobox protein knotted-1-like 13
STRINGVIT_11s0118g00800.t011e-166(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472