PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100260790071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 334aa    MW: 37685.7 Da    PI: 9.357
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100260790071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14.1e-13278325347
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                                   rWT+ E++ l  +v+ +G+g+Wk I        +gRt+ ++k++w+++
  Ote100260790071|100260790071 278 RWTPLEEDTLRAGVETHGKGNWKVILTAYRdvfEGRTEVDLKDKWRNL 325
                                   9*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-14268327IPR009057Homeodomain-like
PROSITE profilePS5129415.32271330IPR017930Myb domain
SMARTSM007177.3E-10275328IPR001005SANT/Myb domain
CDDcd116601.68E-17277327No hitNo description
SuperFamilySSF466892.62E-15277329IPR009057Homeodomain-like
PfamPF002497.2E-11278325IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
KAVWDDSVCE GVLKKFEGVS AVEAVRVYVR EEREKMGPSF LELVAKTVKN EGFLKVMGVD  60
GIDRMAVEES PLSRVNVAEN GSNPNKEMRM RRIELRDKLV SLRNHKEMSS SNPRAPKTVD  120
SDGTMPGPSC RNYSSIRSEE VKKARKALEL SSLELRAVVK DPLPNALRVA EEIANEAKRN  180
KQDDPAEGND GRPQLLIVDA AGVVQSSCGN TNNAPKRSLM ERNSSAHTYE WDDDSNDGSE  240
KETACRAVLR IPSPKRMNIS PLRMCEMNNL KKRRKGRRWT PLEEDTLRAG VETHGKGNWK  300
VILTAYRDVF EGRTEVDLKD KWRNLTRYSK DLES
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090069.11e-115telomere repeat-binding protein 2-like
TrEMBLA0A2G9GRI01e-120A0A2G9GRI0_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37742439