PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100260770061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB | ||||||||
Protein Properties | Length: 209aa MW: 24203.3 Da PI: 9.8943 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.4 | 5.8e-12 | 44 | 80 | 1 | 38 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 rg W + Ed +l ++v+q+G+ +W++Ia++++ gR+++ Ote100260770061|100260770061 44 RGHWRPHEDARLRELVAQFGPQNWNLIAEKLQ-GRSGN 80 899*****************************.***98 PP | |||||||
2 | Myb_DNA-binding | 55.7 | 1.2e-17 | 89 | 130 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++++eE+e+l+ a+ ++G++ W+ Iar ++ gRt++ +k++w+ Ote100260770061|100260770061 89 AFSEEEEERLLAAHSMYGNK-WAMIARLFP-GRTDNAVKNHWHV 130 69******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.265 | 39 | 81 | IPR017930 | Myb domain |
SMART | SM00717 | 0.022 | 43 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-10 | 44 | 80 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.21E-20 | 44 | 128 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.8E-12 | 45 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.38E-8 | 47 | 86 | No hit | No description |
PROSITE profile | PS51294 | 24.896 | 82 | 136 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-18 | 84 | 135 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-14 | 86 | 134 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-14 | 89 | 129 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.18E-7 | 98 | 129 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MDLHNPIDRN GMQDLTFVPP RPAPWPFENE FGPPKPVHTK VCARGHWRPH EDARLRELVA 60 QFGPQNWNLI AEKLQGRSGN KMIKLKQRAF SEEEEERLLA AHSMYGNKWA MIARLFPGRT 120 DNAVKNHWHV IMARKHRERS HVYRRRKPSF PYLKEGNGDQ QSDSNSEVSA SESIVANNRA 180 NLYNCGENEK EKFEKRDMAF IDFLGVGAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-22 | 43 | 135 | 6 | 107 | B-MYB |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012839515.1 | 2e-66 | PREDICTED: transcriptional activator Myb-like | ||||
Swissprot | Q5NBM8 | 1e-53 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | A0A059PRU6 | 2e-82 | A0A059PRU6_SALMI; MYB-related transcription factor | ||||
STRING | Migut.J01602.1.p | 8e-66 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1684 | 24 | 70 |