PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100259360061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HB-other
Protein Properties Length: 708aa    MW: 77105.3 Da    PI: 6.8658
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100259360061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.2e-081474755
                                  --HHHHHHHHHHHHHSSS..--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
                      Homeobox  7 ftkeqleeLeelFeknry..psaeereeLAkkl..........gLterqVkvWFqNrRake 55
                                  f++ ++ e+e+  + ++y  ps+e  e LA++           +++ +qV +WFqNrR+  
  Ote100259360061|100259360061 14 FNPVEVGEMEAILQAHHYtvPSREILEALAQRFsnsadrtgkvEVSGKQVWNWFQNRRYAL 74
                                  788888899999998777779*************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.27E-10476IPR009057Homeodomain-like
SMARTSM003897.7E-4781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-71380IPR009057Homeodomain-like
PfamPF000462.4E-51374IPR001356Homeobox domain
PROSITE profilePS500719.2161377IPR001356Homeobox domain
CDDcd000865.32E-71375No hitNo description
PfamPF167194.0E-39150268IPR032001SAWADEE domain
Gene3DG3DSA:3.90.180.101.2E-40371522IPR011032GroES-like
SuperFamilySSF501293.35E-33371520IPR011032GroES-like
CDDcd052891.47E-78371701No hitNo description
SMARTSM008295.8E-13378701IPR020843Polyketide synthase, enoylreductase domain
PfamPF082401.9E-7396458IPR013154Alcohol dehydrogenase, N-terminal
SuperFamilySSF517352.47E-28487678IPR016040NAD(P)-binding domain
Gene3DG3DSA:3.40.50.7202.6E-15523606IPR016040NAD(P)-binding domain
PfamPF136024.5E-17558701No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MGRPPSNGGP SFRFNPVEVG EMEAILQAHH YTVPSREILE ALAQRFSNSA DRTGKVEVSG  60
KQVWNWFQNR RYALRAKAAR TSVPGQANLP SVPQNDQSVI RNVPQAPQPQ VSQPTPAPPN  120
MVRSMPHVTQ PHPAPSAQNA SRNVSENSLM EFEAKSARDG AWYDVASFIS HRSLESGDPE  180
AMVRFAGFGP EEDEWVNIRR HIRQRSLPCE SSECVAVLPG DLILCFQEGK EQALYFDAHV  240
LDAQRRRHDV RGCRCRFLVR YDHDQSEQLH AMPINVNPQK IVVEAPIVNT VKADAADTIT  300
QKQQPKTEER VDASSTKTSV VPATVPPPAG ESKLVPSKAA DAGNPNNDSS DTAAVNTAVA  360
VVSHPTLPRG AVLLPRFGGP EVMELRENVE IPDLKPNEVL VRSRAVSVNP LDCRIRAGYG  420
RSLYKPLLPL ILGRDVSGEV EAIGSSVRSL SVGQEVFGAL HPTAVRGTYT DYAILSEDEL  480
IPKPDTISHV DASAIPFAAL TAWRALKCIA RIKPGQRVLV VGGGGAVGFS AVQLAVAAGC  540
HVSTTCGGES IERILAAGAE QAVDFTTEDY ERSIKGYFDA VLDTIGVPET ETMGINLLKR  600
GGHYMTLQGE AASYADRYGL AVGLPMATAV LTKKQLQFRF SHGIDYQWAY MRADVEGLYE  660
IGRLSAIGKL KVPVEKTYPF TEVREAHEAK DKRIITGKVV LQLDTQSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vn8_A1e-5237170324374RETICULON-4-INTERACTING PROTEIN 1
2vn8_B1e-5237170324374RETICULON-4-INTERACTING PROTEIN 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ8RWJ71e-112SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2