PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100259100091

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

DBB

Protein Properties

Length: 300aa MW: 32402.3 Da PI: 6.6281

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100259100091	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.1	2.8e-06	4	47	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ + e++ C ++ lC C ++ H H++vpl Ote100259100091\|100259100091 4 QCNVCAAAEAKVLCCADEAALCGACDQKVHAAnklaskHQRVPL 47 7****99*******************66899999999986 PP
2	zf-B_box	27	9.3e-09	54	94	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 ++kC+ ++e +fC ++++llC+ C + +H H Ote100259100091\|100259100091 54 MPKCDICQETVGYFFCLQDRSLLCRRCDVVIHTAnplvsaH 94 799****99*******************555555556 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.182	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	2.72E-6	3	47	No hit	No description
SMART	SM00336	7.8E-8	4	47	IPR000315	B-box-type zinc finger
SMART	SM00336	4.9E-15	52	99	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.603	52	99	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.4E-6	54	94	IPR000315	B-box-type zinc finger
CDD	cd00021	2.11E-7	55	99	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MKIQCNVCAA AEAKVLCCAD EAALCGACDQ KVHAANKLAS KHQRVPLSTS SSHMPKCDIC 60 QETVGYFFCL QDRSLLCRRC DVVIHTANPL VSAHQRFLLT GVKVGLEASE SVPSSPMGKT 120 HSRSNEKNSV LDPHPVPKKT AQVSTTDQSS KTPPVQSSAG GDFSSTKLLF AGGSTNGSSI 180 PLWQLDEFLE LGDYTENYDF VDHDSSKANC GKYGDSDCSP TLRAADMELE GDDCIGLRPD 240 TFWAVPEVPS PPTASGLSWP KMFQTASNSA AFVPDVSSLP AQDFHHHSSH GDNPKRRRRF

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269\|PubMed:18182030, ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:18796637, ECO:0000269\|PubMed:21070414, ECO:0000269\|PubMed:21427283}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:18182030}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098187.1	1e-136	B-box zinc finger protein 22
Swissprot	Q9SYM2	3e-89	BBX22_ARATH; B-box zinc finger protein 22
TrEMBL	A0A2G9G181	1e-146	A0A2G9G181_9LAMI; Uncharacterized protein
STRING	XP_009625544.1	1e-121	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2892	23	46