PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100259090151
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 559aa    MW: 62169.6 Da    PI: 6.1113
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100259090151genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000344062123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  y+C +C+ks+ +  +L  H+r+H
  Ote100259090151|100259090151 40 YVCRICSKSCVSGKSLGGHMRVH 62
                                  9********************99 PP
2zf-C2H211.30.0011149168221
                                   EETTTTEEESSHHHHHHHHH CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                                   +C+ Cgk F +   L  H+r
  Ote100259090151|100259090151 149 SCKECGKEFASLRALSGHMR 168
                                   6******************8 PP
3zf-C2H210.80.0015484506123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++Cp+C k+F++   L  H r H
  Ote100259090151|100259090151 484 HECPICFKVFPSGQALGGHKRAH 506
                                   79***********9999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.29E-53664No hitNo description
PfamPF139124.9E-53964IPR007087Zinc finger, C2H2
PROSITE profilePS501579.3074067IPR007087Zinc finger, C2H2
SMARTSM003550.0194062IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.718148175IPR007087Zinc finger, C2H2
SMARTSM003550.013148170IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.8E-5149172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.87E-7149203No hitNo description
PfamPF139122.1E-6150172IPR007087Zinc finger, C2H2
PROSITE patternPS000280150170IPR007087Zinc finger, C2H2
PfamPF139121.6E-6181205IPR007087Zinc finger, C2H2
PROSITE profilePS501579.993181208IPR007087Zinc finger, C2H2
SMARTSM003550.031181203IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280182203IPR007087Zinc finger, C2H2
PfamPF139125.4E-11484507IPR007087Zinc finger, C2H2
PROSITE profilePS501578.954484506IPR007087Zinc finger, C2H2
SMARTSM003550.19484506IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280486506IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
ICFPPLQIAA SPKRSIFADP ILKGDSFHFL AMGEVQEQRY VCRICSKSCV SGKSLGGHMR  60
VHLAQISASK KAAAQEKAEI KSECDDHDEQ EEDGSYLLKE SCTNQSNSGE EKMVDFIDGD  120
QSNSYELREN PKKSWRISDP KGPNKISNSC KECGKEFASL RALSGHMRCH SSKNKSKKEL  180
HCCKECGRGF DSLRAMFGHM KSHSKRGKIS NVESAESLSD LENFCPIRRK RSRIRYKGTV  240
NPSFSSLDAS NSAFSELEEA EEAAKCLVML SKGCCLNLDS VTESSDDDSA YFGAVTSCRR  300
SKIFCGIDRD FVSDAEKKLW KPQLDSCSSS YANAVTAMNV SEFDELDLKF VAGDQTKFVA  360
DKLCRDNDGT KVDFLCDDKK PSVESADDLG SFLPTKSKEL DEDLLVAESD LEKNSSENEE  420
MMEDSEKRPE HKHKACHKNI PSQCGMIRPK MQSSRSNLCV NDDHVEEESG VGPLSLESSK  480
SKEHECPICF KVFPSGQALG GHKRAHYNGV AESKNRVVSE DERVLDLNFP ITVDARARLG  540
LSSWFVDRSR ENEAFVLTT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554652.11e-154uncharacterized protein LOC105177311
TrEMBLA0A2G9G7081e-136A0A2G9G708_9LAMI; Uncharacterized protein
TrEMBLA0A2G9GNP31e-136A0A2G9GNP3_9LAMI; Uncharacterized protein
STRINGMigut.H00643.1.p2e-68(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69272231