PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100259060041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB_related

Protein Properties

Length: 415aa MW: 45416.9 Da PI: 4.5574

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100259060041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.3	8.6e-09	96	137	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+ E +ll++ ++G + W+++a+ ++ +++ +c+s++ + Ote100259060041\|100259060041 96 PWTESETLLLLESALKHGDD-WDLVAKNVQ-TKSKLECISKLIQ 137 8***************88.*****.*******9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.56E-8	92	144	IPR009057	Homeodomain-like
PROSITE profile	PS51293	16.069	92	143	IPR017884	SANT domain
SMART	SM00717	8.2E-7	93	141	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-5	94	132	IPR009057	Homeodomain-like
CDD	cd00167	7.30E-7	96	134	No hit	No description
Pfam	PF00249	3.1E-9	96	137	IPR001005	SANT/Myb domain
Pfam	PF16495	1.3E-21	318	392	IPR032451	SMARCC, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
LAVDGGGAVG EVGDSGFRWP SLASYSDVYG ELMLQEERKK GGIVCGSCKE NCDSPFYEHT 60 KEANFILCEK CFKSGNLKDI SADDFKLKDT PNQTAPWTES ETLLLLESAL KHGDDWDLVA 120 KNVQTKSKLE CISKLIQLPL GDLMLGAGYR KSRFLDVIDV NNSKQSGVAS NESQEPVKAE 180 EPSFELENKD QQKGDAMCEG PPLKRVCTGP TSDAGNFLMK QVTRISTMLG PHVTASAAEA 240 AVTSLCYENQ CSRELXXXXX XXXSTHVDPN ASPEATNPDR DADAGVDNVV EDKGSNQSGM 300 SSLKSIIPLN LRTRAATATA LGVAAANAKL LADQEEREIG HLVATMIEAQ LKKVQRKVKY 360 FEDLEQMMED ENAQLEEVEE SLIAERLDVL QRIFDAGISR FKDHSLTKHQ SDSVQ

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

LAVDGGGAVG EVGDSGFRWP SLASYSDVYG ELMLQEERKK GGIVCGSCKE NCDSPFYEHT  60
KEANFILCEK CFKSGNLKDI SADDFKLKDT PNQTAPWTES ETLLLLESAL KHGDDWDLVA  120
KNVQTKSKLE CISKLIQLPL GDLMLGAGYR KSRFLDVIDV NNSKQSGVAS NESQEPVKAE  180
EPSFELENKD QQKGDAMCEG PPLKRVCTGP TSDAGNFLMK QVTRISTMLG PHVTASAAEA  240
AVTSLCYENQ CSRELXXXXX XXXSTHVDPN ASPEATNPDR DADAGVDNVV EDKGSNQSGM  300
SSLKSIIPLN LRTRAATATA LGVAAANAKL LADQEEREIG HLVATMIEAQ LKKVQRKVKY  360
FEDLEQMMED ENAQLEEVEE SLIAERLDVL QRIFDAGISR FKDHSLTKHQ SDSVQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073099.1	1e-171	SWI/SNF complex subunit SWI3A
TrEMBL	A0A4D8YS61	0.0	A0A4D8YS61_SALSN; SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
STRING	Migut.I00558.1.p	1e-155	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9858	3	3