PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100259040031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | FAR1 | ||||||||
Protein Properties | Length: 237aa MW: 27247.4 Da PI: 8.2885 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 92.5 | 5.5e-29 | 75 | 162 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkle 82 +Y++YAk+vGF vr+ + ++s+++g++++r+fvC+keg+r ++k k+++ r++ra+tr gCka+++v+kek+g w ++kle Ote100259040031|100259040031 75 YYDAYAKRVGFIVRIGNCHRSSHDGSVISRRFVCNKEGFRVNKKVKRVEVRKPRAVTREGCKAMIMVRKEKSGCWIIAKLE 155 8*********************************************9********************************** PP FAR1 83 leHnHel 89 ++H+H+l Ote100259040031|100259040031 156 TQHSHPL 162 *****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-26 | 75 | 162 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MFLSLFFLVL VVNFDPNEAA NYDKLMEVSS DICMSDGGEM INLYDEKDFS SQELPSNMEP 60 YVGMEFLSEE AAMAYYDAYA KRVGFIVRIG NCHRSSHDGS VISRRFVCNK EGFRVNKKVK 120 RVEVRKPRAV TREGCKAMIM VRKEKSGCWI IAKLETQHSH PLGILQGKIR CGPVRAQSQD 180 EKDKRIRELS SELHRTKQKL AECQKHLDTV LNDVELHVDH LTRSVQHLIQ NVKEVEK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089602.1 | 1e-109 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
TrEMBL | A0A2R6QJP0 | 1e-106 | A0A2R6QJP0_ACTCH; Protein FAR1-RELATED SEQUENCE like (Fragment) | ||||
STRING | Aquca_058_00091.1 | 2e-86 | (Aquilegia coerulea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12791 | 15 | 20 |