PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100258720021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 282aa    MW: 31305.4 Da    PI: 9.8548
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100258720021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.41.2e-11556147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                                  +++WT eE+e l  +v+++G g Wk I r          R+  ++k++w+++
  Ote100258720021|100258720021  5 KQKWTSEEEEALRAGVAKHGAGKWKNIQRDPEfnhllFARSNIDLKDKWRNL 56
                                  79******************************99*9977***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.921161IPR017930Myb domain
SuperFamilySSF466892.23E-15258IPR009057Homeodomain-like
SMARTSM007172.6E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-13456IPR009057Homeodomain-like
PfamPF002493.1E-8556IPR001005SANT/Myb domain
CDDcd116601.20E-20656No hitNo description
SMARTSM005268.2E-16117182IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.106.8E-14119189IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.58E-14119193IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150422.937119187IPR005818Linker histone H1/H5, domain H15
PfamPF005381.2E-9122180IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALRAGV AKHGAGKWKN IQRDPEFNHL LFARSNIDLK DKWRNLSVAN  60
GQGPRDKSKA PKAKANPVEA PATPLPIAQT SASVTPSSQD VSTDVVMLDS SRPLPEGNSA  120
AKYNAMIFEA LSTLKEPYGS DSSAITTFIE QRHKVPQNFK RALSSRLRRL VQQDKLEKIQ  180
NSYRIKSKVQ LDRRSPMITQ REQLHGRQAH STSTSYLGKT VEEAAMSAAY RIAEAENKSF  240
VAAEAVKEAE RVAMMAEDME SLLQFATDCF DQSARGEIVL MA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078025.11e-168telomere repeat-binding factor 4
TrEMBLA0A2G9HZM41e-167A0A2G9HZM4_9LAMI; Uncharacterized protein
STRINGMigut.L01522.1.p1e-147(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355