PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100258710081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HSF
Protein Properties Length: 350aa    MW: 40016.3 Da    PI: 8.737
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100258710081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.51.2e-34601522103
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   F++k+y++++d+++++li w + +nsfvvl++ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+
  Ote100258710081|100258710081  60 FVMKTYQMVSDPATNRLIAWGRANNSFVVLEPLDFSQRILPAYFKHHNFSSFVRQLNTYGFRKVDPDK---------WEFA 131
                                   9********************999*****************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkkse 103
                                   +++F +g+ +ll++i rkk++
  Ote100258710081|100258710081 132 NEWFLRGQAHLLHNIARKKHT 152
                                   ******************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.6E-5156149IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.9E-3657149IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.39E-3257149IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.9E-2960149IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-176083IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-1798110IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434099123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-17111123IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MLKFVAPYCV AKLIXXXXXX XXXXKIYPYI EDGVWGFTAV MRGMEVNNNS SSSNDTIAPF  60
VMKTYQMVSD PATNRLIAWG RANNSFVVLE PLDFSQRILP AYFKHHNFSS FVRQLNTYGF  120
RKVDPDKWEF ANEWFLRGQA HLLHNIARKK HTTRNNTSHF KXXXXXXXXL VMEIAKLKQE  180
QKTLEQELER MNRRLEETER RPQQMMTFLF KVVEDPEILP RMIMEKEKMR RLIYTDKDKK  240
RKLMTTTSSS LSSIKSEDDQ EIETSISSPD RDGCSQSSPS LNMSSPEQPN LGVPVIRPDQ  300
IFLCPGEGTG GFAAVVPPET GGFGYFEGLV AAERASPPPP YPFSLLGGGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-23331491129Heat shock factor protein 1
5d5v_B1e-23331491129Heat shock factor protein 1
5d5v_D1e-23331491129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078395.11e-118heat stress transcription factor C-1-like
TrEMBLA0A4D9A8E91e-135A0A4D9A8E9_SALSN; Heat shock transcription factor, other eukaryote
STRINGMigut.E00326.1.p1e-110(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68322333