PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100258520041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 716aa    MW: 78206.4 Da    PI: 6.1113
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100258520041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.5e-194398156
                                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                  +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+  qVk+WFqN+R+++k
  Ote100258520041|100258520041 43 KKQYHRHTQNQIQEMESFFKECPHPDDSQRKELGRRLGLEPLQVKFWFQNKRTQMK 98
                                  688999***********************************************998 PP
2START2131.1e-662324521206
                                   HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT CS
                         START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqW 72 
                                   ela +a++elv++a+++ep+Wv s+    e + +de++++f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW
  Ote100258520041|100258520041 232 ELAVAAMEELVRMAQSGEPLWVPSAdgsgEVLSEDEYVRTFPRGIGpkplgLKSEASRESAVVIMNHINLVEILMDTN-QW 311
                                   57899**********************9999************999********************************.** PP

                                   -TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTS CS
                         START  73 detla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssv 142
                                      +     +a+tlev+s+g      galq+m+ae+q++splvp R+ +fvRy++q+g+g+w++vdv +d+ ++ +    +
  Ote100258520041|100258520041 312 ASVFSsivsRAMTLEVLSTGvagnynGALQVMTAEFQVPSPLVPtREIYFVRYCKQHGDGTWAVVDVCLDNLRPTT----I 388
                                   *****9*******************************************************************988....6 PP

                                   EE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                         START 143 vRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                    +++++pSg+li++++ng+skvtw+ehv++++r +h+++++lv+sgla+g ++wva l+rqce+
  Ote100258520041|100258520041 389 SKCRRRPSGCLIQELPNGYSKVTWIEHVEVDDRAVHSIYKPLVNSGLAFGPRRWVAILDRQCER 452
                                   89999*********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-212598IPR009057Homeodomain-like
SuperFamilySSF466892.67E-1827100IPR009057Homeodomain-like
PROSITE profilePS5007116.3940100IPR001356Homeobox domain
SMARTSM003891.5E-1742104IPR001356Homeobox domain
PfamPF000465.6E-174398IPR001356Homeobox domain
CDDcd000862.96E-1743101No hitNo description
PROSITE profilePS5084843.74223455IPR002913START domain
SuperFamilySSF559611.26E-35224454No hitNo description
CDDcd088756.33E-128227451No hitNo description
SMARTSM002341.9E-63232452IPR002913START domain
PfamPF018521.7E-55233452IPR002913START domain
Gene3DG3DSA:3.30.530.202.2E-4324444IPR023393START-like domain
SuperFamilySSF559612.61E-12472708No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048825Biological Processcotyledon development
GO:0090627Biological Processplant epidermal cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MGNKTPENEM DLIRDDEFES KSVTDNMENP SGDDHDPNDR PKKKQYHRHT QNQIQEMESF  60
FKECPHPDDS QRKELGRRLG LEPLQVKFWF QNKRTQMKSQ HERHENTQLR NENEKLRAEN  120
IRYKEALTNA ACPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISGIAA KYVGKPMLSS  180
YPQLPPGSSR SLDLGVGSFG ASSGLSGEIF GASDLLRSVS GPSDADKPRI IELAVAAMEE  240
LVRMAQSGEP LWVPSADGSG EVLSEDEYVR TFPRGIGPKP LGLKSEASRE SAVVIMNHIN  300
LVEILMDTNQ WASVFSSIVS RAMTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTREIY  360
FVRYCKQHGD GTWAVVDVCL DNLRPTTISK CRRRPSGCLI QELPNGYSKV TWIEHVEVDD  420
RAVHSIYKPL VNSGLAFGPR RWVAILDRQC ERLASVMANN ISAGDVGVIS SPKGRKSMLK  480
LAERMVMSFC TGVGASTAHT WTTLSGIGAD DVRVMTRKSM DDPGRPPGIV LSAATSFWLP  540
VPPKRTSYGS DLPLKXXXXX XXXXGLVQEM AHIANGRDPG NAVSLLRVNR HHEMQSANSS  600
QSNMLILQES CTDTTGSYVI YAPVDIIAMN VVLSGGDPDY VALLPSGFAI LPDGAEDQTG  660
GIPEVGSGGS LLTVAFQILV DSVPTAKLSL GSVATVNSLI KCTVERIKGA VLHDGA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096101.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_011096102.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_011096103.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_020554106.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_020554107.10.0homeobox-leucine zipper protein MERISTEM L1
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLA0A2G9GCJ20.0A0A2G9GCJ2_9LAMI; Uncharacterized protein
STRINGMigut.M01293.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]