PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100257810051 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | ERF | ||||||||
Protein Properties | Length: 137aa MW: 15855.3 Da PI: 9.4642 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.7 | 3.8e-20 | 13 | 63 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+ ae+Aa+a+++a+++++g+ Ote100257810051|100257810051 13 RYRGVRRRP-WGKWAAEIRDP-----HkaTRVWLGTFDRAEDAARAYDEAALRFRGN 63 59*******.**********7.....337*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.7E-13 | 13 | 62 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.79E-23 | 13 | 72 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.8E-33 | 13 | 71 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.0E-37 | 13 | 76 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.119 | 13 | 70 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.52E-31 | 13 | 72 | No hit | No description |
PRINTS | PR00367 | 1.0E-11 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-11 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MTANQSQSTS YWRYRGVRRR PWGKWAAEIR DPHKATRVWL GTFDRAEDAA RAYDEAALRF 60 RGNKAKLNFP ENVASTSSPN PHLHAQDFAA QTRDFNMQPY SSTLFYQHPT PSDDPTVMST 120 DFSWTHSDHR PTSHDQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-23 | 14 | 75 | 6 | 68 | ATERF1 |
3gcc_A | 2e-23 | 14 | 75 | 6 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00289 | DAP | Transfer from AT2G33710 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027922026.1 | 5e-35 | ethylene-responsive transcription factor ABR1-like isoform X1 | ||||
Refseq | XP_027922028.1 | 6e-35 | ethylene-responsive transcription factor ABR1-like isoform X2 | ||||
Refseq | XP_027922029.1 | 5e-35 | ethylene-responsive transcription factor ERF110-like isoform X3 | ||||
Swissprot | P93007 | 6e-30 | EF112_ARATH; Ethylene-responsive transcription factor ERF112 | ||||
TrEMBL | A0A4D8Z6V4 | 5e-35 | A0A4D8Z6V4_SALSN; EREBP-like factor | ||||
STRING | XP_006464861.1 | 8e-34 | (Citrus sinensis) | ||||
STRING | XP_006427893.1 | 6e-34 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |