PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100257070021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 321aa MW: 36211.8 Da PI: 6.9497

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100257070021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181	3e-56	12	138	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhP+deel+++yL++kv ++++++ +i +vd++kvePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++g Ote100257070021\|100257070021 12 LPPGFRFHPSDEELITHYLTHKVVDSSFTT-IAIGDVDLNKVEPWDLPWKAKMGEKEWYFFCVRDRKYPTGMRTNRATEAG 91 79***********************999.88***********888999*********************** PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 yWkatgkdke+++ ++lvg+kktLvfy+grap+g+kt+Wvmheyrle Ote100257070021\|100257070021 92 YWKATGKDKEIFR-AKSLVGMKKTLVFYRGRAPRGVKTNWVMHEYRLE 138 *********.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-63	9	162	IPR003441	NAC domain
PROSITE profile	PS51005	59.873	12	162	IPR003441	NAC domain
Pfam	PF02365	6.0E-29	13	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MGPIANDESI DLPPGFRFHP SDEELITHYL THKVVDSSFT TIAIGDVDLN KVEPWDLPWK 60 AKMGEKEWYF FCVRDRKYPT GMRTNRATEA GYWKATGKDK EIFRAKSLVG MKKTLVFYRG 120 RAPRGVKTNW VMHEYRLEGK QSMQNLNKSA KNEWVICRIF MKTPGGKKVH ISGIISGGSA 180 SQPSDLPPLM EFSSDDNHVR ATIGAGEVSN ETTFSNPIES SQDNKLFDEF SSSSSKNCDL 240 SPFSFSFPQV STQNSIFSHQ IIPRTQSLGA RDFHYNVSNS GQIMKTELSQ GMSEVGFKSY 300 LDQEIPAIST TPIDLDCLWD Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-53	10	168	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-53	10	168	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-53	10	168	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-53	10	168	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-53	10	168	18	174	NAC domain-containing protein 19
3swm_B	1e-53	10	168	18	174	NAC domain-containing protein 19
3swm_C	1e-53	10	168	18	174	NAC domain-containing protein 19
3swm_D	1e-53	10	168	18	174	NAC domain-containing protein 19
3swp_A	1e-53	10	168	18	174	NAC domain-containing protein 19
3swp_B	1e-53	10	168	18	174	NAC domain-containing protein 19
3swp_C	1e-53	10	168	18	174	NAC domain-containing protein 19
3swp_D	1e-53	10	168	18	174	NAC domain-containing protein 19
4dul_A	1e-53	10	168	15	171	NAC domain-containing protein 19
4dul_B	1e-53	10	168	15	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098651.1	1e-145	NAC domain-containing protein 79
Swissprot	Q9FLJ2	1e-111	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2G9H007	1e-139	A0A2G9H007_9LAMI; Uncharacterized protein
STRING	Migut.H00942.1.p	1e-126	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]