PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100256600001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | ERF | ||||||||
Protein Properties | Length: 49aa MW: 5522.44 Da PI: 11.5951 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.2 | 1.5e-16 | 2 | 44 | 10 | 55 |
AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Ote100256600001|100256600001 2 RNWGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 44 57**********843...6***********************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 18.255 | 1 | 49 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-18 | 1 | 49 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-24 | 1 | 49 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.22E-22 | 1 | 49 | No hit | No description |
Pfam | PF00847 | 5.1E-11 | 2 | 44 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-16 | 2 | 48 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 49 aa Download sequence Send to blast |
MRNWGKWVSE IREPRKKSRI WLGTFPTPEM AARAHDVAAL SIKGASATL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011091185.1 | 8e-28 | ethylene-responsive transcription factor TINY | ||||
Swissprot | Q9LYD3 | 1e-26 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A4D8Z3V2 | 1e-26 | A0A4D8Z3V2_SALSN; EREBP-like factor | ||||
TrEMBL | A0A4D9AKP5 | 2e-26 | A0A4D9AKP5_SALSN; EREBP-like factor | ||||
STRING | Bra008952.1-P | 2e-26 | (Brassica rapa) | ||||
STRING | Bo9g170060.1 | 2e-26 | (Brassica oleracea) |
Publications ? help Back to Top | |||
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