PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100256430051 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | NF-YB | ||||||||
Protein Properties | Length: 251aa MW: 27517.8 Da PI: 8.264 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 173.1 | 3.1e-54 | 54 | 149 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 re+drflPian++rimkk+lP naki+kdak+tvqecvsefisf+tseasdkc +ekrkt+ngddllw+++tlGfe+y++p Ote100256430051|100256430051 54 REHDRFLPIANIGRIMKKALPPNAKIAKDAKDTVQECVSEFISFITSEASDKCLKEKRKTVNGDDLLWSMGTLGFEEYINP 134 89******************************************************************************* PP NF-YB 83 lkvylkkyrelegek 97 lk+yl++yr+leg++ Ote100256430051|100256430051 135 LKIYLSRYRQLEGDT 149 *************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.3E-50 | 50 | 161 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.81E-38 | 57 | 158 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.4E-26 | 59 | 123 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 7.3E-19 | 87 | 105 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 90 | 106 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 7.3E-19 | 106 | 124 | No hit | No description |
PRINTS | PR00615 | 7.3E-19 | 125 | 143 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MKEYYCCSAX XXXXXXXXXX ICGARVSLLG ETMADSPGGA DGGGGDLSPQ SNSREHDRFL 60 PIANIGRIMK KALPPNAKIA KDAKDTVQEC VSEFISFITS EASDKCLKEK RKTVNGDDLL 120 WSMGTLGFEE YINPLKIYLS RYRQLEGDTK GPARGADGST KKDMTVAQLG SDAQMITDLS 180 VVSLMREEFV SGYCVTLATI ARFCRFEFLI LGGRVSQGKS RQKLPLALLA GEIIQTSFSL 240 RSINRYVAHS I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 4e-43 | 54 | 144 | 2 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 4e-43 | 54 | 144 | 2 | 92 | Transcription factor HapC (Eurofung) |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028103481.1 | 1e-74 | nuclear transcription factor Y subunit B-1-like | ||||
Refseq | XP_028122302.1 | 2e-74 | nuclear transcription factor Y subunit B-1-like | ||||
Swissprot | Q8VYK4 | 7e-65 | NFYB8_ARATH; Nuclear transcription factor Y subunit B-8 | ||||
TrEMBL | A0A0N6X6V5 | 3e-77 | A0A0N6X6V5_SALMI; Transcription factor NFYB | ||||
STRING | VIT_13s0019g03600.t01 | 6e-69 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Publications ? help Back to Top | |||
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