PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100254900001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | FAR1 | ||||||||
Protein Properties | Length: 507aa MW: 57484.8 Da PI: 7.8853 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 89.6 | 4.2e-28 | 65 | 152 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkl 81 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e+++ +r+ ++++t+Cka+++vkk++dgkw+++++ Ote100254900001|100254900001 65 SFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESESG---VSRRPSVKKTDCKASMHVKKKRDGKWYIHEF 142 5****************************************999887...77778899*********************** PP FAR1 82 eleHnHelap 91 +eHnHel p Ote100254900001|100254900001 143 IKEHNHELLP 152 *******975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-25 | 65 | 152 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 9.866 | 237 | 273 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.3E-6 | 238 | 270 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.6E-7 | 248 | 275 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
MVDFEENVGG SEQGITMNVV DVVDASRSRE GQISSSSRRD VVGIEGDNFE PHDGIEFDSH 60 EAAYSFYQEY AKSMGFTTSI KNSRRSKKTK EFIDAKFACS RYGVTPESES GVSRRPSVKK 120 TDCKASMHVK KKRDGKWYIH EFIKEHNHEL LPALAYHFRI HRNVKLAEKN NIDILHAPAL 180 KSPSPWEKQM STIYTHAIFR RFQVEVLGVV GCHPKKEKES GGNTTFRVDD CEKNENFVVT 240 WNEAKSEVSC SCLMFEYKGF LCRHSMIVLQ ICGLSSIPSR YILKRWTKDA KNKQMLVEGT 300 ERKHSRVQRY NDLCKRAIEL GEEGSLSEEN YNIACRALVE ALKNCVNINN RNPAECSSNA 360 VGLRCAEEEN QLLQATKTNK KKNTNKKRKM QQEPEAVVID TQDSLQQMDH LTSEGIPLNG 420 YYGSQQHVHG LLNLMEPPND AFYVSQQTMQ GLGPLHTLAS SHDSFFGTQQ SMPALGHMDF 480 RQPAFTYGMQ DEQSVRPAEL HGSARHA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00434 | DAP | Transfer from AT4G15090 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011085456.1 | 0.0 | protein FAR-RED IMPAIRED RESPONSE 1 | ||||
Refseq | XP_011085457.1 | 0.0 | protein FAR-RED IMPAIRED RESPONSE 1 | ||||
Swissprot | Q9SWG3 | 1e-129 | FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1 | ||||
TrEMBL | A0A0B0NR12 | 0.0 | A0A0B0NR12_GOSAR; Far-red impaired response 1-like protein | ||||
STRING | Migut.H01263.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA496 | 21 | 103 |