PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100254890001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

Nin-like

Protein Properties

Length: 949aa MW: 104442 Da PI: 6.0256

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100254890001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.2	1.9e-29	541	592	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yFs+++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Ote100254890001\|100254890001 541 AEKTISLEVLQQYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 592 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.461	531	612	IPR003035	RWP-RK domain
Pfam	PF02042	8.8E-27	544	592	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.05E-22	851	938	No hit	No description
SMART	SM00666	2.3E-24	854	936	IPR000270	PB1 domain
Pfam	PF00564	3.5E-17	854	935	IPR000270	PB1 domain
PROSITE profile	PS51745	25.41	854	936	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.4E-26	854	935	No hit	No description
CDD	cd06407	3.41E-36	855	935	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 949 aa Download sequence Send to blast
PAPPPFLFSA SDQPCSPLWA FSDDNNVAAA ALRLTDSSRV FTYAGNPEAA TEGALENDDK 60 KKLPSPLMGL IPIDNPDGSC IIKQRMTQAL RYFKDLTEQH VLAQVWAPVR NGDRYVLTTS 120 GQPFLLDPNS NGLHQYRLVS LSYMFSVDGD TDGDLGLPGR VFRQKLPEWT PNVQYYTSKE 180 FPRLNHALHY NVRGTLALPV FEPSGLSCVG VLELIMTSQK INYAPEVDKV CKALEAVNLK 240 SSEILDHQIQ RAQICNEGRQ NALAEILEII TVVCETHTLP LAQTWVPCRH RSVLANGGGF 300 KKTCSSFDGS CMGQVCMSTT DVAFYVVDAN MWGFRDXXXX XXXXXXXXLQ KGQGVAGKAF 360 ASHNLCFCQD ITEFCKTEYP LVHYARMFEL KSSFAICLRS NHTGNDDYVL EFFLPPNIES 420 YEDQRALLDS LLVTMKQHFG SLRVASGKDL DHEWRSIEII KVSMDEKPLR PDFAATSPPR 480 PASFQNGDAT HLDAFKAQLL MGEFNGVNVK GNFGGPTENN GTSAAEVKDV GKKPERKRGK 540 AEKTISLEVL QQYFSGSLKD AAKSLGVCPT TMKRICRQHG ISRWPSRKIN KVNRSLSKLK 600 RVIESVQGGE GTFSLTSLTT SPIPVTVGPI SWAANLNGAN HHSSPGSGPC EFQEEKKEVA 660 LRDTGAEAET SNQYVGEIRA KTEKVGHNGV GFVACEGSSR SRTGSGSREE STGTPTSQGS 720 CQGSPCLRNE TSPQNDPAIS PVDXXXXXXX XXXXXXXHEA ACEESRGINL SSAFSIPGNF 780 TPPPKETIGG MLVEDAGSSH DLRNLCPPGE ALFDEHVTEY SWTKSNLHDH PKNCIAAPVD 840 DQMPQFDARP EAKTITIKAT YREDIIRFRL PIDSGIMKLK EEVAKRLKLE LGTFDIKYLD 900 DDHEWVLIAC DPDLQECFDV SRSSGGNIIR LLVHDIMANL GSSCESSGE

Sequence ? help Back to Top

Protein Sequence Length: 949 aa Download sequence Send to blast

PAPPPFLFSA SDQPCSPLWA FSDDNNVAAA ALRLTDSSRV FTYAGNPEAA TEGALENDDK  60
KKLPSPLMGL IPIDNPDGSC IIKQRMTQAL RYFKDLTEQH VLAQVWAPVR NGDRYVLTTS  120
GQPFLLDPNS NGLHQYRLVS LSYMFSVDGD TDGDLGLPGR VFRQKLPEWT PNVQYYTSKE  180
FPRLNHALHY NVRGTLALPV FEPSGLSCVG VLELIMTSQK INYAPEVDKV CKALEAVNLK  240
SSEILDHQIQ RAQICNEGRQ NALAEILEII TVVCETHTLP LAQTWVPCRH RSVLANGGGF  300
KKTCSSFDGS CMGQVCMSTT DVAFYVVDAN MWGFRDXXXX XXXXXXXXLQ KGQGVAGKAF  360
ASHNLCFCQD ITEFCKTEYP LVHYARMFEL KSSFAICLRS NHTGNDDYVL EFFLPPNIES  420
YEDQRALLDS LLVTMKQHFG SLRVASGKDL DHEWRSIEII KVSMDEKPLR PDFAATSPPR  480
PASFQNGDAT HLDAFKAQLL MGEFNGVNVK GNFGGPTENN GTSAAEVKDV GKKPERKRGK  540
AEKTISLEVL QQYFSGSLKD AAKSLGVCPT TMKRICRQHG ISRWPSRKIN KVNRSLSKLK  600
RVIESVQGGE GTFSLTSLTT SPIPVTVGPI SWAANLNGAN HHSSPGSGPC EFQEEKKEVA  660
LRDTGAEAET SNQYVGEIRA KTEKVGHNGV GFVACEGSSR SRTGSGSREE STGTPTSQGS  720
CQGSPCLRNE TSPQNDPAIS PVDXXXXXXX XXXXXXXHEA ACEESRGINL SSAFSIPGNF  780
TPPPKETIGG MLVEDAGSSH DLRNLCPPGE ALFDEHVTEY SWTKSNLHDH PKNCIAAPVD  840
DQMPQFDARP EAKTITIKAT YREDIIRFRL PIDSGIMKLK EEVAKRLKLE LGTFDIKYLD  900
DDHEWVLIAC DPDLQECFDV SRSSGGNIIR LLVHDIMANL GSSCESSGE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070353.1	0.0	protein NLP6 isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A4D8YYC5	0.0	A0A4D8YYC5_SALSN; Uncharacterized protein
STRING	Migut.E00644.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5223	22	39

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]