PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100254390022 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 222aa MW: 24646 Da PI: 5.8791 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 75.7 | 3.5e-24 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n + rq t++kR+ gi+KKA+ELSvLCd++va+i+fs++g+l ++s Ote100254390022|100254390022 10 RIDNPTSRQLTYAKRKDGIIKKASELSVLCDTDVALIMFSPSGRLTSFAS 59 8*********************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.3E-33 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.997 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.66E-26 | 2 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-22 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.0E-22 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-22 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-22 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MGRKKLAMRR IDNPTSRQLT YAKRKDGIIK KASELSVLCD TDVALIMFSP SGRLTSFASN 60 GRIEDIFLRF VDRPDELRGG PINHEEFLSQ KLKQLKYEGG MLEKIAMYYD PNVEKINSAL 120 EAGVYQQFLT SAIQRMQCSK AKLLGNQLVA ERTENVEVQA ATIQMDDATS ITDQSVEGNQ 180 NGMNSTMDES GTSLAAGAGP HLSLGFIEAQ RLWNKCGPLD DY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 1e-15 | 1 | 82 | 1 | 83 | MEF2 CHIMERA |
6bz1_B | 1e-15 | 1 | 82 | 1 | 83 | MEF2 CHIMERA |
6bz1_C | 1e-15 | 1 | 82 | 1 | 83 | MEF2 CHIMERA |
6bz1_D | 1e-15 | 1 | 82 | 1 | 83 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020549788.1 | 1e-112 | agamous-like MADS-box protein AGL104 | ||||
Swissprot | Q9LM46 | 6e-28 | AG104_ARATH; Agamous-like MADS-box protein AGL104 | ||||
TrEMBL | A0A2G9HBM0 | 1e-111 | A0A2G9HBM0_9LAMI; MADS box transcription factor | ||||
STRING | Migut.H01211.1.p | 3e-97 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5292 | 18 | 36 |
Publications ? help Back to Top | |||
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