PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100254390021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family M-type_MADS
Protein Properties Length: 270aa    MW: 30313.7 Da    PI: 7.8338
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100254390021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.34.9e-241059251
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  ri+n + rq t++kR+ gi+KKA+ELSvLCd++va+i+fs++g+l  ++s
  Ote100254390021|100254390021 10 RIDNPTSRQLTYAKRKDGIIKKASELSVLCDTDVALIMFSPSGRLTSFAS 59
                                  8*********************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.3E-33160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.997161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-26275IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-22323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.5E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-222338IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-223859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGRKKLAMRR IDNPTSRQLT YAKRKDGIIK KASELSVLCD TDVALIMFSP SGRLTSFASN  60
GRIEDIFLRF VDRPDELRGG PINHEEFLSQ KLKQLKYEGG MLEKIAIKKN YSEMMPFPCL  120
TCVLILAANK FSIEALEEKL DKLNRKQRES QEKMRYYDPN VEKINSALEA GVYQQFLTSA  180
IQRMQCSKAK LLGNQLVAER TENVEVQAAT IQMDDATSIT DQSVEGNQNG MNSTMDESGT  240
SLAAGAGPHL SLGFIEAQRL WNKCGPLDDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A3e-15182183MEF2 CHIMERA
6bz1_B3e-15182183MEF2 CHIMERA
6bz1_C3e-15182183MEF2 CHIMERA
6bz1_D3e-15182183MEF2 CHIMERA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020549788.11e-117agamous-like MADS-box protein AGL104
TrEMBLA0A2G9HBM01e-119A0A2G9HBM0_9LAMI; MADS box transcription factor
STRINGMigut.H01211.1.p1e-112(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52921836