PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100253700041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 231aa MW: 25839.2 Da PI: 8.3702 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 46.2 | 7.9e-15 | 92 | 143 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Lee F+ +++++ +eLA++l+L rqV vWFqNrRa+ k Ote100253700041|100253700041 92 RKKLRLTKAQSALLEESFKLHSTLNP---QELARELKLRPRQVEVWFQNRRARTK 143 678899******************98...57**********************98 PP | |||||||
2 | HD-ZIP_I/II | 108.6 | 4.5e-35 | 92 | 178 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 +kk+rl+k q++lLEesF+ +++L+p+ elareL+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l++en+rL+ Ote100253700041|100253700041 92 RKKLRLTKAQSALLEESFKLHSTLNPQ---ELARELKLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLSNENQRLQ 169 69************************6...7************************************************** PP HD-ZIP_I/II 82 keveeLreel 91 ke +eL+ +l Ote100253700041|100253700041 170 KELQELK-TL 178 ******9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.72E-15 | 82 | 146 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-13 | 85 | 148 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 13.232 | 88 | 145 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-11 | 90 | 149 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.5E-12 | 92 | 143 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.23E-12 | 92 | 146 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 120 | 143 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 6.6E-20 | 145 | 188 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 2.1E-9 | 145 | 178 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MGINDDLVLG LGLTTTEEHI SFNKSSSPSL TLSLFGPNKK VDKVLSNDGQ DRDSAASSLS 60 NVSVKRERDE EVETERVSSR VSDEDDDGSN GRKKLRLTKA QSALLEESFK LHSTLNPQEL 120 ARELKLRPRQ VEVWFQNRRA RTKLKQTEVD CELLKKCCET LSNENQRLQK ELQELKTLKL 180 VHPLYLQFPA ATLTMCPSCE KIGGGATTGG AENAAKRPFA KPQLYNCFNK T |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099420.1 | 1e-97 | homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46604 | 2e-71 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A2G9H1F9 | 1e-100 | A0A2G9H1F9_9LAMI; Transcription factor HEX | ||||
STRING | VIT_00s0732g00010.t01 | 2e-89 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Publications ? help Back to Top | |||
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