PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100253630011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | C2H2 | ||||||||
Protein Properties | Length: 249aa MW: 27842.5 Da PI: 6.509 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00025 | 44 | 66 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Ote100253630011|100253630011 44 YSCSFCRRDFRSAQALGGHMNVH 66 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.64E-6 | 41 | 70 | No hit | No description |
PROSITE profile | PS50157 | 11.136 | 44 | 71 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 46 | 66 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MDEARFWMWA KSKPPAYGDS WEEQAFAEDA AGALGGCVWP PRSYSCSFCR RDFRSAQALG 60 GHMNVHRRDR ARLKQSPNPA ADIVPHASNP STSFDPPFSS QMCTLLFSNP NPKLSDAAPI 120 SRVIRVSSPP PAAVVVHKID DRNPPPWSSF LSEKRGRDEE KIEKPESRAE KEDCVTEELS 180 MGLNLVASQW ETNTCSEEEV GSCKRRRIEA KPLSFLVERC LPQPEVLKLC SVSDELDLEL 240 RLGFAPKVK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-12 | 39 | 66 | 2 | 29 | superman protein |
2l1o_A | 2e-12 | 39 | 66 | 2 | 29 | Transcriptional regulator SUPERMAN |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094902.1 | 1e-99 | zinc finger protein 10 | ||||
TrEMBL | A0A4D9C7E2 | 2e-95 | A0A4D9C7E2_SALSN; Uncharacterized protein | ||||
STRING | Migut.J00299.1.p | 1e-62 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9045 | 20 | 26 |