PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100253390131
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family CO-like
Protein Properties Length: 336aa    MW: 38328.1 Da    PI: 6.9283
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100253390131genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.45.2e-07334334
                      zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH 34
                                  e+ C+ +   ++ ++C++++  lC +C    H
  Ote100253390131|100253390131  3 EPLCEFCRAMRAAIYCKSDRAALCVQCDGRVH 34
                                  789************************98777 PP
2CCT54.25.1e-19224267144
                           CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                   R++a+ RY  Kr+tRk+ K+irY+sRKa+A++R+RvKGrFvk+ 
  Ote100253390131|100253390131 224 RDKAKIRYIAKRSTRKYGKHIRYSSRKARADTRQRVKGRFVKSG 267
                                   888999************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.6E-12148IPR000315B-box-type zinc finger
PROSITE profilePS501199.641148IPR000315B-box-type zinc finger
PfamPF006433.5E-5235IPR000315B-box-type zinc finger
CDDcd000214.53E-5436No hitNo description
PROSITE profilePS5101713.453224266IPR010402CCT domain
PfamPF062031.5E-14224266IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MPEPLCEFCR AMRAAIYCKS DRAALCVQCD GRVHAANPLA RRHLRSLICD RCNFDAAVVR  60
CLDDKLSLCG NCDNGCFPAP HHRRGKLSFY SGCPTVEELS KFWPFAIDFQ QDFCRTEVHS  120
MNEIPEFANQ ESEDIYGVDI DGSFESSYEM FGNQSIYQCE DDGAFPMEGM SSSTNCMLMN  180
PNIGVGFANE HPPSSMIGDC SDLFLTGDSR WDSSFESPTS PRGRDKAKIR YIAKRSTRKY  240
GKHIRYSSRK ARADTRQRVK GRFVKSGQTY DYDPQEALHF QALDQRDERL WNHAAWTCEQ  300
IVDEVKGQNW MRKLIAEAVC ASSSNRNFER PLFLAR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021675842.12e-58putative zinc finger protein CONSTANS-LIKE 11
TrEMBLA0A4D8XVS22e-79A0A4D8XVS2_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42311726