PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100253220021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ARR-B
Protein Properties Length: 447aa    MW: 50909.8 Da    PI: 6.9798
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100253220021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like68.41.2e-21185238155
                       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                   kpr++Wt+ LH++F e+v+q+ G ++A Pk+ilelm+++ L++e+v+SHLQkYRl
  Ote100253220021|100253220021 185 KPRVVWTSHLHNKFEEVVRQI-GVQHAGPKKILELMGIPWLSRENVASHLQKYRL 238
                                   79*******************.9*******************************7 PP
2Response_reg41.47.5e-15171291108
                                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEES CS
                  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvta 79 
                                   +l+vd + + ++ l+++l+k +y +v+    g+eal+++++ +  +D+++ D +  +mdG+ ++++  + e +lp+i    
  Ote100253220021|100253220021  17 ILVVDADAACLKSLEKMLTKCKY-QVRISNLGREALDMIEKGKngFDMVMSDENVGDMDGFVFVEQVGRLETNLPVIXXXX 96 
                                   89*********************.***************999999**********************99999******995 PP

                                   TTT.HHHHHHHH...HTTESEEEESS--HHHHH CS
                  Response_reg  80 hge.eedaleal...kaGakdflsKpfdpeelv 108
                                         ++++++   k Ga d+l+Kp+ p++++
  Ote100253220021|100253220021  97 XXXxXXLTVNVMkgvKHGACDYLVKPIRPKDIR 129
                                   54436666665544489************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.27E-2113142IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.2E-2614139No hitNo description
SMARTSM004481.3E-715132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011026.30316136IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.9E-1217129IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.70E-1318129No hitNo description
SuperFamilySSF466896.09E-16183241IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-23184242IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-20185239IPR006447Myb domain, plants
PfamPF002491.0E-5187237IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MESTSLNSDR FPEGLRILVV DADAACLKSL EKMLTKCKYQ VRISNLGREA LDMIEKGKNG  60
FDMVMSDENV GDMDGFVFVE QVGRLETNLP VIXXXXXXXX XXLTVNVMKG VKHGACDYLV  120
KPIRPKDIRY IWQHVFRKRI SSVNAKESID ISTKTTTYHG DDGDDGQMVS IKKRIINESS  180
APVKKPRVVW TSHLHNKFEE VVRQIGVQHA GPKKILELMG IPWLSRENVA SHLQKYRLFL  240
ARQHRENEVK AAYAGKNVSN MYGQSGNSLT LQQNIVINEN NYCPSNVNGE GNMYGDHHMT  300
YNQQLQLNES SSISRSHYNQ TDFNPHFQYD HFPIVSNDPC SSSNCSYFYS KNRHYAITEN  360
TTPHHTLSTH YHQQNMNLGP RPALRLQEVE LAELPSALED IYLQDPHTVC INSLGCINQG  420
LISDDHPHSA AHAHDHPDTY EPQVWHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-16184242462ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A022Q1S71e-79A0A022Q1S7_ERYGU; Uncharacterized protein
STRINGMigut.E00229.1.p2e-78(Erythranthe guttata)