PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100253040051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

GRAS

Protein Properties

Length: 758aa MW: 84577.6 Da PI: 6.465

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100253040051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	380.9	1.5e-116	363	732	1	372
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 l++lL+ cA+av+++d + +++L++++++++p+gd mqRla+yf+ +L+ar+a+s++++yk+l +ts +++l+a+ Ote100253040051\|100253040051 363 LRTLLTLCAQAVAADDRRTSNEFLKQIRQHSTPTGDGMQRLAHYFADGLEARMAGSGTQIYKSLINLPTS---AADVLKAY 440 5789**********************************************************999998...89** PP GRAS 82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeelee 160 ++++ ++P+ k+s++ aN++I++ e+ +++HiiDf+i G+QWp++lq+L+++p+gpp+lRiTg++ p +g + ++ee Ote100253040051\|100253040051 441 HTYVATCPFRKMSNFFANKTIMKVSENVKKLHIIDFGILFGFQWPCFLQKLSNKPGGPPKLRITGIDFPCPGfrPSIRVEE 521 *****************************************************************999999** PP GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241 tg+rLa +Ae+++vpfef++ +a+++e+++le+L+++++E++aV++ ++ ++llde+v ++s+r+ vL+l+k+++P v+v+ Ote100253040051\|100253040051 522 TGRRLAGYAETFKVPFEFHA-IAQKWETIKLEDLKIEKDEMVAVSCLFNFKYLLDETVVVNSPRNMVLNLIKKTNPSVFVL 601 ****************.7******************************************************* PP GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322 ++ +n++ F +rf eal yys+lfd+l+a +pre er+ +E+ l+gre++nv+ace aer+er et+++W+ r +a Ote100253040051\|100253040051 602 GIKNGAYNAPFFITRFREALFYYSSLFDMLDAIIPREVPERMLLEKILFGREATNVIACEAAERIERPETYKQWQVRTIRA 682 ***************************************************************************** PP GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372 GF+++pl+e+++ a+ ++ + + + v+e++++l+lgWk+r L+++S+ Ote100253040051\|100253040051 683 GFEQLPLDEEITGMARKWVKSAYHKDFVVDEDNQWLLLGWKGRILYALSS 732 *******************888*******************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.525	337	714	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.3E-114	363	732	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 758 aa Download sequence Send to blast
MGGGHGPEIW CYDGATSRMR FNSQTVPVFT DPNRVDDLVA RENFLSSTHA DSAPVSISKN 60 LDARVQSSGG DSPVDLDFSD AVLKYINHIL MEEDVEEKAC VVPESAAALQ AAEKSFYEVI 120 GECYPSSTDF QLKPSLDQTF EHSDGKLFGI NSFGGSYDSA TSCPDWNSDS NSDRLDSYHD 180 TSKTNPQSTS QCSYASSSCS GNFFEGPVDS PVSTLRVPDI FVDSQSALQF KKGVEEASKF 240 LPNGNNLIAA FGYDAVNHAV KVENKVDIDE VDVLRGKKNL HHDSMGLQEE RSKKQSAVFA 300 DSTVSPDMFD RVLLCSGGKN DTALREALNE ITRNTQQSGQ LQESNGGKSG GKKKQGRKNV 360 VDLRTLLTLC AQAVAADDRR TSNEFLKQIR QHSTPTGDGM QRLAHYFADG LEARMAGSGT 420 QIYKSLINLP TSAADVLKAY HTYVATCPFR KMSNFFANKT IMKVSENVKK LHIIDFGILF 480 GFQWPCFLQK LSNKPGGPPK LRITGIDFPC PGFRPSIRVE ETGRRLAGYA ETFKVPFEFH 540 AIAQKWETIK LEDLKIEKDE MVAVSCLFNF KYLLDETVVV NSPRNMVLNL IKKTNPSVFV 600 LGIKNGAYNA PFFITRFREA LFYYSSLFDM LDAIIPREVP ERMLLEKILF GREATNVIAC 660 EAAERIERPE TYKQWQVRTI RAGFEQLPLD EEITGMARKW VKSAYHKDFV VDEDNQWLLL 720 GWKGRILYAL SSCRLPSEAR EKAFSPSATP SKSFNFLH

Sequence ? help Back to Top

Protein Sequence Length: 758 aa Download sequence Send to blast

MGGGHGPEIW CYDGATSRMR FNSQTVPVFT DPNRVDDLVA RENFLSSTHA DSAPVSISKN  60
LDARVQSSGG DSPVDLDFSD AVLKYINHIL MEEDVEEKAC VVPESAAALQ AAEKSFYEVI  120
GECYPSSTDF QLKPSLDQTF EHSDGKLFGI NSFGGSYDSA TSCPDWNSDS NSDRLDSYHD  180
TSKTNPQSTS QCSYASSSCS GNFFEGPVDS PVSTLRVPDI FVDSQSALQF KKGVEEASKF  240
LPNGNNLIAA FGYDAVNHAV KVENKVDIDE VDVLRGKKNL HHDSMGLQEE RSKKQSAVFA  300
DSTVSPDMFD RVLLCSGGKN DTALREALNE ITRNTQQSGQ LQESNGGKSG GKKKQGRKNV  360
VDLRTLLTLC AQAVAADDRR TSNEFLKQIR QHSTPTGDGM QRLAHYFADG LEARMAGSGT  420
QIYKSLINLP TSAADVLKAY HTYVATCPFR KMSNFFANKT IMKVSENVKK LHIIDFGILF  480
GFQWPCFLQK LSNKPGGPPK LRITGIDFPC PGFRPSIRVE ETGRRLAGYA ETFKVPFEFH  540
AIAQKWETIK LEDLKIEKDE MVAVSCLFNF KYLLDETVVV NSPRNMVLNL IKKTNPSVFV  600
LGIKNGAYNA PFFITRFREA LFYYSSLFDM LDAIIPREVP ERMLLEKILF GREATNVIAC  660
EAAERIERPE TYKQWQVRTI RAGFEQLPLD EEITGMARKW VKSAYHKDFV VDEDNQWLLL  720
GWKGRILYAL SSCRLPSEAR EKAFSPSATP SKSFNFLH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-53	363	734	5	375	GRAS family transcription factor containing protein, expressed
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085020.1	0.0	scarecrow-like protein 14
Refseq	XP_011085021.1	0.0	scarecrow-like protein 14
Refseq	XP_011085022.1	0.0	scarecrow-like protein 14
Refseq	XP_011085023.1	0.0	scarecrow-like protein 14
Refseq	XP_011085025.1	0.0	scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A4D8XZM1	0.0	A0A4D8XZM1_SALSN; Uncharacterized protein
STRING	Migut.F00778.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]