PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100252980051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ERF
Protein Properties Length: 318aa    MW: 35354.3 Da    PI: 9.7874
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100252980051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-17239288255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   g++GV  ++ +gr++A Irdps+   ++r++lg+f++ae+Aa+a++aa+++++g
  Ote100252980051|100252980051 239 GFRGVLKRP-WGRYAAVIRDPSK---KTRVWLGTFDSAEDAARAYDAAARSIRG 288
                                   79****999.**********965...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.417239296IPR001471AP2/ERF domain
PfamPF008476.5E-11239288IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-20239297IPR016177DNA-binding domain
SMARTSM003801.2E-33239302IPR001471AP2/ERF domain
PRINTSPR003674.5E-9240251IPR001471AP2/ERF domain
CDDcd000188.25E-15240296No hitNo description
Gene3DG3DSA:3.30.730.104.2E-29240296IPR001471AP2/ERF domain
PRINTSPR003674.5E-9262278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MLKGHSLLLE GYDKDHVEMY DVVRDVAIYI ASDKKWIAPD AERHQCVLHK TRANPAAPTN  60
DKYIGKSPNI GFGRAYQWEV KWCEVIGTFT LWKAGNASTG NHIKVEGIGG VDCVGVLRWM  120
GMKEYGKRKE ECITERRWFK FGFWSSSQHA RAGFQKLFYS EDIGDIDGPM SSNSFNNLQQ  180
LRPGYLPGLE RLSIVSTFNM LSSLHVSSLM MTGSSMPKGT AAAVPAVEAH GSGGSKEIGF  240
RGVLKRPWGR YAAVIRDPSK KTRVWLGTFD SAEDAARAYD AAARSIRGPK AKTNFPTPPN  300
GAVFHDFNTQ NRNLEIMV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-17234300976Ethylene-responsive transcription factor ERF096