PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100252500052
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ARR-B
Protein Properties Length: 598aa    MW: 65811.6 Da    PI: 5.2744
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100252500052genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like925.1e-29173226155
                       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                   kpr++W+ eLH++Fv av+qL G+ekA+Pk+il++m+v+gLt+e+v+SHLQkYRl
  Ote100252500052|100252500052 173 KPRVVWSIELHRKFVAAVNQL-GIEKAVPKRILDMMNVEGLTRENVASHLQKYRL 226
                                   79*******************.********************************8 PP
2Response_reg54.37.6e-19191301109
                                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT...SEHHHHHHHHHHHTTTSEEEE CS
                  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg...mdGlellkeireeepklpiiv 76 
                                   vl vdD+p+ ++ll+++l+k +y +v+++++++ al++++e++  +Dl++            G++ll+     e++lp+i+
  Ote100252500052|100252500052  19 VLAVDDDPTCLKLLETLLKKCQY-NVTATSQARIALKMIRENKdrFDLVIXXXXXXXxxxXXGFKLLELVGL-EMDLPVIM 97 
                                   799********************.***************888889******977666223578887766533.469***** PP

                                   EESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                  Response_reg  77 vtahgeeedalealkaGakdflsKpfdpeelvk 109
                                   ++a+++++++ + +  Ga d+l+Kp+ +eel++
  Ote100252500052|100252500052  98 LSANSDPKLVMKGVTHGACDYLVKPVRIEELRN 130
                                   *******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.1E-2916153No hitNo description
SuperFamilySSF521721.99E-2316142IPR011006CheY-like superfamily
SMARTSM004489.4E-1617132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011034.49318136IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.7E-1519131IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.23E-1120135No hitNo description
Gene3DG3DSA:1.10.10.604.8E-30170231IPR009057Homeodomain-like
PROSITE profilePS5129411.647170229IPR017930Myb domain
SuperFamilySSF466891.97E-19171230IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-24173226IPR006447Myb domain, plants
PfamPF002491.8E-6175225IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MVVEEIRGDA ENFPAGLRVL AVDDDPTCLK LLETLLKKCQ YNVTATSQAR IALKMIRENK  60
DRFDLVIXXX XXXXXXXXXG FKLLELVGLE MDLPVIMLSA NSDPKLVMKG VTHGACDYLV  120
KPVRIEELRN IWQHVGEKRN TDQNGKFSRK RKDEDDDSED NGNDCDEPGS QKKPRVVWSI  180
ELHRKFVAAV NQLGIEKAVP KRILDMMNVE GLTRENVASH LQKYRLYLKR ISSATSQQTN  240
MAAALAGNDS PFMRMASLDG LGDFRTLAGS RLSNVVLSPY TNGGMFGRLN SPRNMNLRNL  300
TPSTVVQPNQ AQNLSTSINS LREMHLVLPN SSQNPSLFQE IQSSLELDQV QPNRVGAGAT  360
NINTINNSRI FRTASAFTDT GANNLLNSSM RSPLVLHGNA QAALSNGGFA SQSAHEMALT  420
SESFNAGVSV SRDNNSSNRP YAQINPIGLS SGMNLPTFED SREMQCQVGS MGDLHMMEQR  480
QNYAHNSQFP ANGNVSNFGQ SIGVLNQNTD VYIGGRSSGS ALAPMQQDED GNVALESRSR  540
SNEDLLYEQS NLQGGFAPQS QGYDSLDELM NAVINRERDE TVSNGEFGFD DYSFGAGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-25170232264ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078598.10.0two-component response regulator ARR12
SwissprotQ6K8X61e-117ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A4D8ZNJ20.0A0A4D8ZNJ2_SALSN; Two-component response regulator ARR-B family
STRINGXP_009757804.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]