PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100252500051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ARR-B
Protein Properties Length: 636aa    MW: 70214.8 Da    PI: 5.179
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100252500051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.63.6e-25182231151
                       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                                   kpr++W+ eLH++Fv av+qL G+ekA+Pk+il++m+v+gLt+e+v+SHLQ
  Ote100252500051|100252500051 182 KPRVVWSIELHRKFVAAVNQL-GIEKAVPKRILDMMNVEGLTRENVASHLQ 231
                                   79*******************.****************************9 PP
2Response_reg39.82.4e-14191391109
                                   EEEESSSHHHHHHHHHHHHHTTCE........EEEEESSHHHHHHHHHHHH..ESEEEEESSCTT...SEHHHHHHHHHHH CS
                  Response_reg   1 vlivdDeplvrellrqalekegye........evaeaddgeealellkekd..pDlillDiempg...mdGlellkeiree 68 
                                   vl vdD+p+ ++ll+++l+k +y+         v+++++++ al++++e++  +Dl++            G++ll+     
  Ote100252500051|100252500051  19 VLAVDDDPTCLKLLETLLKKCQYNglylwfifPVTATSQARIALKMIRENKdrFDLVIXXXXXXXxxxXXGFKLLELVGL- 98 
                                   799****************8777422233323699************888889******977666223578887766533. PP

                                   TTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                  Response_reg  69 epklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                                   e++lp+i+++a+++++++ + +  Ga d+l+Kp+ +eel++
  Ote100252500051|100252500051  99 EMDLPVIMLSANSDPKLVMKGVTHGACDYLVKPVRIEELRN 139
                                   469************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.42E-1916151IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.0E-2616162No hitNo description
SMARTSM004481.6E-1017141IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011032.25918145IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.1E-1119140IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.47E-949144No hitNo description
Gene3DG3DSA:1.10.10.601.2E-24179232IPR009057Homeodomain-like
SuperFamilySSF466893.94E-15180232IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-21182231IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MVVEEIRGDA ENFPAGLRVL AVDDDPTCLK LLETLLKKCQ YNGLYLWFIF PVTATSQARI  60
ALKMIRENKD RFDLVIXXXX XXXXXXXXGF KLLELVGLEM DLPVIMLSAN SDPKLVMKGV  120
THGACDYLVK PVRIEELRNI WQHVGEKRNT DQNGKFSRKR KDEDDDSEDN GNDCDEPGSQ  180
KKPRVVWSIE LHRKFVAAVN QLGIEKAVPK RILDMMNVEG LTRENVASHL QFQIMLSNDD  240
CNANLSSFLK VILVNFVPLQ KYRLYLKRIS SATSQQTNMA AALAGNDSPF MRMASLDGLG  300
DFRTLAGSRL SNVVLSPYTN GGMFGRLNSP RNMNLRNLTP STVVQPNQAQ NLSTSINSLR  360
EMHLVLPNSS QNPSLFQEIQ SSLELDQVQP NRVGAGATNI NTINNSRIFR TASAFTDTGA  420
NNLLNSSMRS PLVLHGNAQA ALSNGGFASQ SAHEMALTSE SFNAGVSVSR DNNSSNRPYA  480
QINPIGLSSG MNLPTFEDSR EMQCQVGSMG DLHMMEQRQN YAHNSQFPAN GNVSNFGQSI  540
GVLNQNTDVY IGGRSSGSAL APMQQDEDGN VALESRSRSN EDLLYEQSNL QGGFAPQSQG  600
YDSLDELMNA VINRERDETV SNGEFGFDDY SFGAGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-21179236260ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078598.10.0two-component response regulator ARR12
SwissprotQ6K8X61e-108ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A4D9B6590.0A0A4D9B659_SALSN; Two-component response regulator ARR-B family
STRINGXP_009757804.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]