PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100252220031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 291aa MW: 32592.7 Da PI: 6.9051

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100252220031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.7	2.3e-14	101	152	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A++++k+L+ Ote100252220031\|100252220031 101 QRMTHIAVERNRRRQMNDYLAVLRSLMPPS---YAQRGDQASIVGGAINFVKELE 152 79**************************...*****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	3.4E-13	99	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.50E-12	99	156	No hit	No description
SuperFamily	SSF47459	1.09E-16	99	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.815	100	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-11	101	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.8E-9	106	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MALEAIILQQ NPFIYGCKDY PYNHGFEEEN TNARNLENYE GGAATNRYWE SPPSSAAHTA 60 ISSPETCAGD GFLSSPAAKP LVHRKRRRTR PAKNKEEMEN QRMTHIAVER NRRRQMNDYL 120 AVLRSLMPPS YAQRGDQASI VGGAINFVKE LEQLHQFLEA NNPANIQHHP FSNFFTFPQY 180 STCASTITSA FGEAVAERRS SIADIEVMMA ESHANIKLST KRRPKQLLKL VAGFQSIGLT 240 ILHLNITTVD HSVLYSFSVK VEDNCELSTV NDIATSVHDI MGMIQEESIC S

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100183.2	1e-128	LOW QUALITY PROTEIN: transcription factor bHLH96-like
Swissprot	Q9C7T4	5e-79	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A0A0H3Y8U2	1e-138	A0A0H3Y8U2_SALMI; Basic helix-loop-helix transcription factor
STRING	XP_010272971.1	1e-110	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1996	24	62

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]