PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100252210001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 89aa MW: 10377.6 Da PI: 10.4222 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.4 | 3.4e-27 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+i+n + rqvtfskRr g++KKAeEL vLCda+v +iifsstgkl+ey Ote100252210001|100252210001 9 KKIDNVTARQVTFSKRRRGLFKKAEELAVLCDADVGLIIFSSTGKLFEYX 58 68**********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.0E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.1 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.42E-27 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.26E-33 | 2 | 57 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MAREKIQIKK IDNVTARQVT FSKRRRGLFK KAEELAVLCD ADVGLIIFSS TGKLFEYXXX 60 XXXXXXXXXX XXXXXXXXXK ADPFKYKYS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 9e-18 | 1 | 57 | 1 | 57 | MEF2C |
5f28_B | 9e-18 | 1 | 57 | 1 | 57 | MEF2C |
5f28_C | 9e-18 | 1 | 57 | 1 | 57 | MEF2C |
5f28_D | 9e-18 | 1 | 57 | 1 | 57 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024028572.1 | 5e-32 | MADS-box protein JOINTLESS isoform X1 | ||||
Refseq | XP_024028573.1 | 5e-32 | MADS-box protein JOINTLESS isoform X1 | ||||
Refseq | XP_024028574.1 | 4e-32 | MADS-box protein JOINTLESS isoform X2 | ||||
Swissprot | Q9FVC1 | 9e-31 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | A0A3G1VUM5 | 1e-30 | A0A3G1VUM5_MORAL; Short vegetative phase | ||||
STRING | XP_009345714.1 | 3e-30 | (Pyrus x bretschneideri) | ||||
STRING | cassava4.1_015543m | 2e-30 | (Manihot esculenta) | ||||
STRING | XP_009783886.1 | 3e-30 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |