PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100251890111
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family E2F/DP
Protein Properties Length: 359aa    MW: 39109.7 Da    PI: 8.418
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100251890111genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.69.2e-28127209271
                       E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekn 65 
                                   ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+
  Ote100251890111|100251890111 127 SGRGLRQFSMK---VCEKVENkGRTTYNEVADELVAEfsdpsnsiatpdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKK 203
                                   689********...******99*******************************************************.*** PP

                       E2F_TDP  66 eirwkg 71 
                                   ei+wkg
  Ote100251890111|100251890111 204 EIQWKG 209
                                   ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094048.4E-1214345IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.6E-46122214IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013727.4E-36126209IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.0E-25128209IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.5E-21129210IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.47E-42214317IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.04E-41215339No hitNo description
SMARTSM011381.4E-65216356IPR014889Transcription factor DP, C-terminal
PfamPF087811.1E-39217324IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGNHSNNNSS NRDDGNKNSS TISRGSGGFG GATRSWGTAV SGGQSMSTSG SVGSPSSRSE  60
AAIATTASDS AIMRMNNLDI QGDDAGSQAT AGTILLVVIV IQHGAELKLI LNRKKKRGQR  120
AVGGDKSGRG LRQFSMKVCE KVENKGRTTY NEVADELVAE FSDPSNSIAT PDQQQYDEKN  180
IRRRVYDALN VLMAMDIISK DKKEIQWKGL PRTSLDDVEE LKTERLGVRN RIEKKAAYLG  240
ELEEQYVGLQ NLVERNRKLY GSGNAPSGGV ALPFILVQTR PHATVEVEIS EDMQLVHFDF  300
NSTPFELHDD NYVLKAMKSS EMTRNDGGES SSMPNIASRP PNSSPLPGIL KARVKHEQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-39120214193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075421.10.0transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-154DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A4D9AGF00.0A0A4D9AGF0_SALSN; Uncharacterized protein
STRINGMigut.K00137.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62652435