PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100251770021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

FAR1

Protein Properties

Length: 615aa MW: 68532.3 Da PI: 6.4622

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100251770021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.8	6.6e-22	182	268	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkl 81 k+Yn++A GFs+rk+ +ksk +g +++r+++C ++g+ +++++ + ++r+etrtgC+a+++++++++g+++v+++ Ote100251770021\|100251770021 182 KCYNRFALIEGFSIRKDFVNKSKVTGLVVSRRYTCHRQGYGSSKRDM---NMKPRKETRTGCQAHMTITRQTNGRYRVIHF 259 57*************************************998776...999************************ PP FAR1 82 eleHnHela 90 e+ HnHe++ Ote100251770021\|100251770021 260 ETRHNHEFV 268 *****97 PP
2	FAR1	56.8	7.3e-18	339	405	24	91
FAR1 24 rngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +g + +r+++C +eg+r+++k+ +k +r+r+etr+gC a+l+++++ dg+++vt++e+ HnHel+p Ote100251770021\|100251770021 339 XDGAVASRRYTCFREGYRQNDKRG-SKVKRPRKETRVGCMAQLVISRQADGRYRVTHFEERHNHELVP 405 678999*************999.99*************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-19	183	268	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	6.3E-15	339	405	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 615 aa Download sequence Send to blast
MDSGFGSGMR DSFENSVIEE GGPTVLVDTC VDQIGESSSF QYNAEGGFVH KDASLSQETS 60 STEKDVMDVD SESTYSCLNS SSEEKCVDSD GKNEFSSPNG HLNNDGEHEF PSPDMEGKQD 120 DRSPGISSDE PLAMSADKKQ DSISEAPFNT SSGSIHVVKD EVDEYIVPKL GVEFESEDHA 180 YKCYNRFALI EGFSIRKDFV NKSKVTGLVV SRRYTCHRQG YGSSKRDMNM KPRKETRTGC 240 QAHMTITRQT NGRYRVIHFE TRHNHEFVTP FTAHLLPSQK RISFVEAVEA ESASTPVPDG 300 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXD GAVASRRYTC FREGYRQNDK 360 RGSKVKRPRK ETRVGCMAQL VISRQADGRY RVTHFEERHN HELVPACKVR TLRSQKRPLA 420 NQIVESGASG VSEMPPNSLA ELLSTGIGVQ EDPIDHEMSL SSKRSKVLSD LLWMGAFFFN 480 KFLETLFLAK RVGGGGGGGI EMVPCFLFEM LFPSTAVCGC TDGGCAQCKK MGHQEGPSFK 540 AKAAAQFSKF ISCFLLQSKS YLLYFSTGQL MLQSEEEIHR TLSSVLNMKG VDILGDCSLL 600 RKEYQVTAIV PQSLY

Sequence ? help Back to Top

Protein Sequence Length: 615 aa Download sequence Send to blast

MDSGFGSGMR DSFENSVIEE GGPTVLVDTC VDQIGESSSF QYNAEGGFVH KDASLSQETS  60
STEKDVMDVD SESTYSCLNS SSEEKCVDSD GKNEFSSPNG HLNNDGEHEF PSPDMEGKQD  120
DRSPGISSDE PLAMSADKKQ DSISEAPFNT SSGSIHVVKD EVDEYIVPKL GVEFESEDHA  180
YKCYNRFALI EGFSIRKDFV NKSKVTGLVV SRRYTCHRQG YGSSKRDMNM KPRKETRTGC  240
QAHMTITRQT NGRYRVIHFE TRHNHEFVTP FTAHLLPSQK RISFVEAVEA ESASTPVPDG  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXD GAVASRRYTC FREGYRQNDK  360
RGSKVKRPRK ETRVGCMAQL VISRQADGRY RVTHFEERHN HELVPACKVR TLRSQKRPLA  420
NQIVESGASG VSEMPPNSLA ELLSTGIGVQ EDPIDHEMSL SSKRSKVLSD LLWMGAFFFN  480
KFLETLFLAK RVGGGGGGGI EMVPCFLFEM LFPSTAVCGC TDGGCAQCKK MGHQEGPSFK  540
AKAAAQFSKF ISCFLLQSKS YLLYFSTGQL MLQSEEEIHR TLSSVLNMKG VDILGDCSLL  600
RKEYQVTAIV PQSLY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098802.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_011098803.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_011098804.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A4D9AK92	0.0	A0A4D9AK92_SALSN; Zinc finger SWIM domain-containing protein 3
STRING	Migut.H00048.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3021	17	40