PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100251470061

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 278aa MW: 31833.9 Da PI: 7.0305

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100251470061	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	151.9	3e-47	12	138	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 ppG+rFhP+d+el+++yL++kv++ +l++ +vi++vd+y+++PwdLp+++ +e+e yfF++rd+ky++g r+nra++sgy Ote100251470061\|100251470061 12 PPGIRFHPSDQELISYYLHRKVKSLPLPA-NVITDVDLYTYDPWDLPRNTVFGEEESYFFTPRDRKYPNGGRPNRAAASGY 91 9**************************.99***********77777899********************** PP NAM 83 Wkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatg+d+++ s +++ +g+kk Lvfy+gr p+g++ dW+m eyrl Ote100251470061\|100251470061 92 WKATGTDQPIRSLfGSRIIGVKKPLVFYRGRPPTGHRMDWIMTEYRL 138 ******99989999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-58	7	164	IPR003441	NAC domain
PROSITE profile	PS51005	55.75	11	164	IPR003441	NAC domain
Pfam	PF02365	7.0E-24	12	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MQEITISNTK FPPGIRFHPS DQELISYYLH RKVKSLPLPA NVITDVDLYT YDPWDLPRNT 60 VFGEEESYFF TPRDRKYPNG GRPNRAAASG YWKATGTDQP IRSLFGSRII GVKKPLVFYR 120 GRPPTGHRMD WIMTEYRLPD TSRPSKSTGS MRLDDWVLCR IRQKGNMSKN EISDEQSLCS 180 SEIVRRSPDM LSEYLQSNEY KLIVSLLAGH DRSTVFQSSF RSESSPSKES VISYEQTDFD 240 FQSGPLVVVE DAASYGQHAC CSLQELDMMP ALQQNFLQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-59	7	166	11	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269\|PubMed:29760199}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020552291.1	1e-98	NAC domain-containing protein 18-like isoform X2
Swissprot	K4BNG7	3e-70	NAP2_SOLLC; NAC domain-containing protein 2
TrEMBL	A0A2G9H970	1e-102	A0A2G9H970_9LAMI; Uncharacterized protein
STRING	Migut.D02201.1.p	1e-102	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13390	11	17

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]