PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100249960001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ERF
Protein Properties Length: 64aa    MW: 7448.56 Da    PI: 10.5893
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100249960001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38e-18252256
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                  +ykGVr +k +g++v+e+r p++   r r++lg++ tae+Aa+a +aa  +l+g+
  Ote100249960001|100249960001  2 KYKGVRKRK-WGKYVSEVRLPNS---RERIWLGSYETAEKAARAFDAALFCLRGP 52
                                  7*****999.*******999833...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.43E-26261No hitNo description
PROSITE profilePS5103221.298259IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-30260IPR001471AP2/ERF domain
SMARTSM003803.8E-29264IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-21260IPR016177DNA-binding domain
PfamPF008473.1E-11251IPR001471AP2/ERF domain
PRINTSPR003675.9E-10314IPR001471AP2/ERF domain
PRINTSPR003675.9E-102541IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
MKYKGVRKRK WGKYVSEVRL PNSRERIWLG SYETAEKAAR AFDAALFCLR GPNAKFNFPD  60
DPPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-172611474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081953.25e-39ethylene-responsive transcription factor ERF018-like
SwissprotQ84QC22e-35ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A2G9H4V52e-36A0A2G9H4V5_9LAMI; Uncharacterized protein
STRINGMigut.A00330.1.p1e-35(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]