PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100249800181

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bZIP

Protein Properties

Length: 351aa MW: 38406.1 Da PI: 5.5812

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100249800181	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31	5.5e-10	107	153	5	51
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 k +r NReA r++R++Kka+++ Le++v L a N++L k+l+ Ote100249800181\|100249800181 107 KGKKRPLGNREAVRKYREKKKARTASLEDEVVRLRALNQQLMKRLQG 153 55678889**********************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.4E-14	100	171	No hit	No description
SMART	SM00338	3.1E-12	103	170	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	1.2E-13	105	152	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.151	105	152	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.5E-7	108	152	No hit	No description
CDD	cd14686	2.42E-11	109	162	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071294	Biological Process	cellular response to zinc ion
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MDDGELDFPN DQMLSCLDMT NAQSSCSFDI AEFLDRTQSC NDALGRTEAY TDVLGRTQSC 60 THAHACNPSG PDKSHTHTCI HVHTQIMPSP SSGQDPSDDT AESVDKKGKK RPLGNREAVR 120 KYREKKKART ASLEDEVVRL RALNQQLMKR LQGQAFLEAE IARLKCLLVD IRGRIEGEIG 180 SFPYQKPNNV NANLAGTYVM NPCNMERSDL LHCLHSGSDT ALNGQGVADC GFENLQCSGN 240 QNCEPEELLD CGIGGGNLVS SANASSVGKR KDDAVGEYFG KIDLSKIAVC NGELKNLSME 300 SIEHCQNLLA HQSNEPRVAG ETEHKIGVLV RPIVSIVEYH LLSALSENFL R

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MDDGELDFPN DQMLSCLDMT NAQSSCSFDI AEFLDRTQSC NDALGRTEAY TDVLGRTQSC  60
THAHACNPSG PDKSHTHTCI HVHTQIMPSP SSGQDPSDDT AESVDKKGKK RPLGNREAVR  120
KYREKKKART ASLEDEVVRL RALNQQLMKR LQGQAFLEAE IARLKCLLVD IRGRIEGEIG  180
SFPYQKPNNV NANLAGTYVM NPCNMERSDL LHCLHSGSDT ALNGQGVADC GFENLQCSGN  240
QNCEPEELLD CGIGGGNLVS SANASSVGKR KDDAVGEYFG KIDLSKIAVC NGELKNLSME  300
SIEHCQNLLA HQSNEPRVAG ETEHKIGVLV RPIVSIVEYH LLSALSENFL R

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088608.1	1e-169	basic leucine zipper 23 isoform X2
Refseq	XP_020551600.1	1e-169	basic leucine zipper 23 isoform X1
Refseq	XP_020551601.1	1e-169	basic leucine zipper 23 isoform X1
Swissprot	Q8GTS2	1e-82	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	A0A2G9HNQ3	1e-166	A0A2G9HNQ3_9LAMI; Uncharacterized protein
STRING	Migut.B00082.1.p	1e-158	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2989	24	52

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]