PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100249660001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family SBP
Protein Properties Length: 370aa    MW: 41439.9 Da    PI: 7.4531
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100249660001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.61e-39156231176
                                   --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                           SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                                   +CqvegC+ dl+ ak+yhrrh++Ce+hsk+p+v+v+g+e+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrr+ 
  Ote100249660001|100249660001 156 CCQVEGCNLDLKLAKDYHRRHRICETHSKSPKVIVAGMERRFCQQCSRFHDLSEFDDKKRSCRRRLSDHNARRRRV 231
                                   6*************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.7E-34151218IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.197154231IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.16E-36155232IPR004333Transcription factor, SBP-box
PfamPF031104.7E-32157230IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEKFLVPNGD GIRDGAMRYR MEHFTSLPPT LYAVFAPPPP SPSLSITSLA HVMEGLEWEN  60
LALYNARPVQ IPQPLDFPMP NENQFGTCSS SKFPEPSSLD GFGMIGCSPE PVIGLRLGQH  120
RDYGEGSRTL LSSSFPVSST PTKRSRASYH NMQNPCCQVE GCNLDLKLAK DYHRRHRICE  180
THSKSPKVIV AGMERRFCQQ CSRFHDLSEF DDKKRSCRRR LSDHNARRRR VXXXXXXXXX  240
XXLSSPGLPP ALYDHALIRP SKPRGVDGTL NFSSDALHSP QILDQCLHVA STDSSMAPDL  300
VSAHSLLSSN GWSMNEGEYS PATRHSDLTL FHTDNVGSDE GPPPVLLLNL HNSHHQEYQL  360
FKDPYHSATF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-281572301184squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093932.14e-78squamosa promoter-binding-like protein 12
TrEMBLA0A2I6SET72e-67A0A2I6SET7_9ROSI; SBP-box transcription factor
STRINGVIT_11s0065g00170.t013e-62(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA136441216