PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100249180011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 917aa    MW: 104617 Da    PI: 8.2697
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100249180011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.92.1e-07521563343
                                   SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                                   +W+   +  lv+a k ++++   +W+++a+ ++ g+t  qck +
  Ote100249180011|100249180011 521 SWSVVQERALVQALKTFPKDtnqRWERVAAAVP-GKTVVQCKKK 563
                                   7********************************.********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465652.49E-1577162IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1109.8E-1590162IPR001623DnaJ domain
SMARTSM002713.2E-992190IPR001623DnaJ domain
PROSITE profilePS5007612.87293174IPR001623DnaJ domain
PfamPF002261.8E-1093160IPR001623DnaJ domain
CDDcd062571.68E-1193160IPR001623DnaJ domain
Gene3DG3DSA:1.10.10.602.2E-4385433IPR009057Homeodomain-like
PROSITE profilePS500906.156386441IPR017877Myb-like domain
SMARTSM007171.3E-4390443IPR001005SANT/Myb domain
SuperFamilySSF466892.62E-6392435IPR009057Homeodomain-like
CDDcd001670.00177393433No hitNo description
PROSITE profilePS500906.551514568IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.7E-4514563IPR009057Homeodomain-like
SuperFamilySSF466895.31E-8517566IPR009057Homeodomain-like
SMARTSM007172.9E-9518570IPR001005SANT/Myb domain
CDDcd001673.69E-5521568No hitNo description
PfamPF002495.0E-6521564IPR001005SANT/Myb domain
SMARTSM0071728615674IPR001005SANT/Myb domain
PROSITE profilePS500904.821619650IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 917 aa     Download sequence    Send to blast
MLLITYSEEI VDGEPIIVSS NSLPIKALNH EPAGHAFHVA ARRLIGHFLE VDDKDGDDGI  60
GVSDEKEHVY SHSSNSYSSK GKKKPGGENQ QLDHYALLGL SHLRYLATED QIRKSYREAA  120
LRHHPDKQAT LLLAEETEDA KQAKKDEIES HFKAIQEAYE DFFKVYGPAF MRNGRWSVNQ  180
PIPNLGDDKT PLKEVDSFYD FWYAFKSWRE FPHSDEFDLE QAESRDHRRW MERQNAKLSE  240
KARKEEYARI RTLVDNAYKR DPRILRRKDE AKAENCFKSE KIEGERKXXX XXXLRKERTR  300
LRTLAAPILS QHLLDITDDE VESLCSSLDK EQLKSLCDRM EGKEVVETAK VLSECLNYDQ  360
KLKDGKEDKK NSKQNGSVNK QATYSNNTKR ERPWLKEEIE LLRKGMQKYP KGTSRRWEVI  420
SEYISTGRSV EEILKATKTV LLQKPDSAKA FDSFLEKRKP APTIASPLST REEVEGVSSN  480
YTDERKSSVP DNLQEPSNHI INSPVDGAAA NEVSSGTNPE SWSVVQERAL VQALKTFPKD  540
TNQRWERVAA AVPGKTVVQC KKKISQMKEN FRNSNVTDKN INISEEKDSS SQNQQTQTQK  600
SADSEGVNGV PLVSDADIWS EVQEKALVQA LKTFPKDINQ RWERIATAVP VHKVGGGGGL  660
EASLQEYQLQ MQCGGREEGP RAAPPVHFHR CLXXXXXGSL MLHCRWSWRR LASYQRQMRC  720
RDIAVYAGDV MDAGPPPISV HGIETDEVFL SXXXXXXXXX XXXXLEFLKS RSFSKCSSNR  780
LCQICPVPAE IACTKSMGSL SGVLGRTCWR LHRPWWWWGA EQRRSREKAP VRKWSWRKAY  840
HYGENGPSLF PAFIIPVHGN AIFKCFLLLP APAHPRXXXX XXXXXXXXXX XXXXXXXXRS  900
GGGEEGVGDG GEWEWQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A4e-1916126420123Zuotin
5dje_B4e-1916126420123Zuotin
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022894878.10.0dnaJ homolog subfamily C member 2-like isoform X1
TrEMBLA0A4D9C3E50.0A0A4D9C3E5_SALSN; DnaJ-like protein subfamily C member 2
STRINGMigut.I00387.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA95572225