PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100247880121

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

FAR1

Protein Properties

Length: 562aa MW: 63149.9 Da PI: 6.2924

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100247880121	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87	2.7e-27	89	191	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvk 69 fY+eYA++vGF++ +++s++sk+++e+++++f Cs++g+++e +k+ ++++ +ra ++t+Cka+++vk Ote100247880121\|100247880121 89 FYQEYARSVGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYEKSlnrprsrqgsnqdADNSTGRRACSKTDCKASMHVK 169 9***************************************9999999999999877666666699********** PP FAR1 70 kekdgkwevtkleleHnHelap 91 +++dgkw ++++e+eHnHel p Ote100247880121\|100247880121 170 RRSDGKWIIHRFEKEHNHELLP 191 *****************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.5E-25	89	191	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009585	Biological Process	red, far-red light phototransduction
GO:0010218	Biological Process	response to far red light
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence Send to blast
MDIDLRLPSG EHDKEIEEPN GIVNMLDGEE KPLNVDGVGD TMGDVEEKLH GEDGDDENSP 60 LHDIDFKDVT ILEPLPGMEF GSHGDAYAFY QEYARSVGFN TAIQNSRRSK TSREFIDAKF 120 ACSRYGTKRE YEKSLNRPRS RQGSNQDADN STGRRACSKT DCKASMHVKR RSDGKWIIHR 180 FEKEHNHELL PAQAVSEQTR RMYAAMARQF AEYKSAASSD TWNKQPALKS PSPFEKHVAG 240 LYTNAVFRKF QVEVLGAVAC IPKKEEQVDA VMTFKVQDFE RNQEFIVTLN ELKSEVSXXX 300 XXXXXXXXXX XXAMIVLQIC GISTIPSQYI LKRWTKDAKS RYTMGEGSEQ LQSRVQRFND 360 LCSRAIKLGE EGSLSQESYN LSVRALDEAF ENCLNANNSN RNLLEAGPSA SQGILCIEED 420 LQSGSLNKAS KKKNSTKKRK VNMETDVITV GTSESLQQME KLTSRPVNLD GFFGHQQAVP 480 GMVQLNLMGP TRDPYFGNQQ TIQGLGQLNS IAPTHDSYYG TQPAMPGMGH MEFFRTTNFG 540 YGIRDEPNVR SAQLHDDAPR HA

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence Send to blast

MDIDLRLPSG EHDKEIEEPN GIVNMLDGEE KPLNVDGVGD TMGDVEEKLH GEDGDDENSP  60
LHDIDFKDVT ILEPLPGMEF GSHGDAYAFY QEYARSVGFN TAIQNSRRSK TSREFIDAKF  120
ACSRYGTKRE YEKSLNRPRS RQGSNQDADN STGRRACSKT DCKASMHVKR RSDGKWIIHR  180
FEKEHNHELL PAQAVSEQTR RMYAAMARQF AEYKSAASSD TWNKQPALKS PSPFEKHVAG  240
LYTNAVFRKF QVEVLGAVAC IPKKEEQVDA VMTFKVQDFE RNQEFIVTLN ELKSEVSXXX  300
XXXXXXXXXX XXAMIVLQIC GISTIPSQYI LKRWTKDAKS RYTMGEGSEQ LQSRVQRFND  360
LCSRAIKLGE EGSLSQESYN LSVRALDEAF ENCLNANNSN RNLLEAGPSA SQGILCIEED  420
LQSGSLNKAS KKKNSTKKRK VNMETDVITV GTSESLQQME KLTSRPVNLD GFFGHQQAVP  480
GMVQLNLMGP TRDPYFGNQQ TIQGLGQLNS IAPTHDSYYG TQPAMPGMGH MEFFRTTNFG  540
YGIRDEPNVR SAQLHDDAPR HA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:17012604, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:18715961, ECO:0000269\|PubMed:22634759}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00078	ChIP-seq	Transfer from AT3G22170	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100396.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1
Refseq	XP_011100397.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2
Swissprot	Q9LIE5	1e-126	FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBL	A0A0A0KV81	0.0	A0A0A0KV81_CUCSA; Uncharacterized protein
STRING	Migut.M00094.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Publications ? help Back to Top
Chang N,Gao Y,Zhao L,Liu X,Gao H Arabidopsis FHY3/CPD45 regulates far-red light signaling and chloroplast division in parallel. Sci Rep, 2015. 5: p. 9612 [PMID:25872642] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Li D, et al. FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9375-80 [PMID:27469166] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]