PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100246860151
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 800aa    MW: 88217.6 Da    PI: 5.4444
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100246860151genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.66.8e-111866347
                                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHH CS
                      Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvW 47
                                  k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvW
  Ote100246860151|100246860151 18 KYVRYTPEQVEALERLYHDCPKPSSLRRQQLIRECpilsNIEPKQIKVW 66
                                  5679********************************************* PP
2START178.93e-561743822205
                                   HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEE CS
                         START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetl 82 
                                   +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l
  Ote100246860151|100246860151 174 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVASRACGLVGLEPT-RVAEILKDRPSWYRDCRAVDVL 253
                                   789*******************************************************.8888888888************ PP

                                   EEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEE CS
                         START  83 evissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepk 157
                                   ++ s+g  g+++l +++l+a+++l+p Rdf+ +Ry+  +++g++v++++S++++q+ p+    +++vRae+lpSg+li+p+
  Ote100246860151|100246860151 254 NAMSTGngGTIELLYMQLYAPTTLAPaRDFWLLRYTSIMEDGSLVVCERSLNNTQNGPSmppVQHFVRAEMLPSGYLIRPC 334
                                   *********************************************************9988899***************** PP

                                   CTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                         START 158 snghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                                   ++g+s +++v+h+dl+ ++++++lr+l++s++   ++t++a+l+++++
  Ote100246860151|100246860151 335 EGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLLSQRTTLAALRQLRQ 382
                                   ********************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.3651377IPR001356Homeobox domain
SuperFamilySSF466896.57E-81766IPR009057Homeodomain-like
CDDcd000864.40E-91866No hitNo description
PfamPF000461.9E-81966IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-92166IPR009057Homeodomain-like
CDDcd146861.54E-581121No hitNo description
PROSITE profilePS5084826.245164379IPR002913START domain
CDDcd088751.82E-79168383No hitNo description
SMARTSM002341.1E-39173383IPR002913START domain
Gene3DG3DSA:3.30.530.208.4E-23173379IPR023393START-like domain
SuperFamilySSF559611.29E-36173380No hitNo description
PfamPF018528.9E-54174382IPR002913START domain
PfamPF086703.5E-45668799IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010067Biological Processprocambium histogenesis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0010089Biological Processxylem development
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 800 aa     Download sequence    Send to blast
MMAVTSACKD KMGLDNGKYV RYTPEQVEAL ERLYHDCPKP SSLRRQQLIR ECPILSNIEP  60
KQIKVWXXXX XXXXXXXXXX SRTCREKQRK EASRLQAVNR KLTAMNKLLM EENDRLQKQV  120
SQLVYENSYF RQHTQNPTLG STDNSCESVV TSGQHHLTPQ DPPKDASPAG LLSIAEETLT  180
EFLSKATGTA VEWVQMPGMK PGPDSIGIIA ISHGCTGVAS RACGLVGLEP TRVAEILKDR  240
PSWYRDCRAV DVLNAMSTGN GGTIELLYMQ LYAPTTLAPA RDFWLLRYTS IMEDGSLVVC  300
ERSLNNTQNG PSMPPVQHFV RAEMLPSGYL IRPCEGGGSI IHIVDHMDLE PWSVPEVLRP  360
LYESSTLLSQ RTTLAALRQL RQISQEVSQP NVTGWGRRPA ALRALGQRLS RGFNEAVNGF  420
TDEGWSILES DGIDDVTVHV NSSPAKLMGT ILTYANGFPS MSNAVLCAKA SMLLQNVPPA  480
ILLRFLREHR SEWADSGIDA YSVAAVKAGP CSIPVSRVGC FGGQVILPLA HTIENEEFME  540
VIRLENMAQY RDDVVMPSDI FLLQVCNGVD ETAVGTCAEL VFAPIDASFS DDAPLLPSGF  600
RIIPLDSKAD ASSPNRTLDL ASTLEVGPPG SRMCGDNPRN AKSVMTIAFQ FAFEMHLQES  660
VAAMARQFFL GVDLLKPAAE GNESVLKTLW HHSDAILCCS LKALPVFTFA NQGGLDMLET  720
TLVALQDITL EKIFNDNGKK TLFAELPQIM QQGFACLQGG ICLSSMGRPI SYERAVAWKV  780
LNEEEDAHCL CFMFVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081776.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A4D9B7850.0A0A4D9B785_SALSN; Homeobox-leucine zipper protein
STRINGMigut.A00196.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]