PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100246310052

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MIKC_MADS

Protein Properties

Length: 277aa MW: 31316.1 Da PI: 11.0536

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100246310052	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	91.5	4.1e-29	19	66	1	48
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+ly+ Ote100246310052\|100246310052 19 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYD 66 79********************************************95 PP
2	K-box	96.9	3.2e-32	167	262	4	99
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 s+ +s++ea+++ +qqe++kL+++i+ +q ++R++lG++++ + lk+L+++e+++e++++++R+kKnell+++ie +qk+e Ote100246310052\|100246310052 167 SNAVSTSEANTQFYQQEANKLRRQIRDIQASNRQMLGDGVTGMALKDLKSVESKVERAISRVRAKKNELLFAEIELMQKRE 247 5556699************************************************************************ PP K-box 85 kelqeenkaLrkkle 99 el+++n+ Lr+kl+ Ote100246310052\|100246310052 248 LELHNANMFLRSKLK 262 **********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	31.342	11	71	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.7E-36	11	70	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.26E-35	12	66	No hit	No description
SuperFamily	SSF55455	5.62E-27	12	71	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-30	13	33	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.5E-25	20	65	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-30	33	48	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-30	48	69	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	7.1E-24	174	261	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	13.3	177	269	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MAFPDQESRK NGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFST 60 RGRLYDIIRI SINHNAVKSS FAGKEEIFNL IKPRRLGFSK LLIQSAPEGN KGGRRRVLTA 120 GRKGEATRGG MAHQPIILWD LVPAWMRAAN HVRATIDRYK KATADSSNAV STSEANTQFY 180 QQEANKLRRQ IRDIQASNRQ MLGDGVTGMA LKDLKSVESK VERAISRVRA KKNELLFAEI 240 ELMQKRELEL HNANMFLRSK LKSGLFSWEG KRDDGGG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1egw_A	1e-16	12	65	1	54	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B	1e-16	12	65	1	54	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C	1e-16	12	65	1	54	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D	1e-16	12	65	1	54	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1tqe_P	1e-16	12	65	2	55	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-16	12	65	2	55	Myocyte-specific enhancer factor 2B
1tqe_R	1e-16	12	65	2	55	Myocyte-specific enhancer factor 2B
1tqe_S	1e-16	12	65	2	55	Myocyte-specific enhancer factor 2B
3mu6_A	1e-16	12	65	1	54	Myocyte-specific enhancer factor 2A
3mu6_B	1e-16	12	65	1	54	Myocyte-specific enhancer factor 2A
3mu6_C	1e-16	12	65	1	54	Myocyte-specific enhancer factor 2A
3mu6_D	1e-16	12	65	1	54	Myocyte-specific enhancer factor 2A
6c9l_A	1e-16	12	65	2	55	Myocyte-specific enhancer factor 2B
6c9l_B	1e-16	12	65	2	55	Myocyte-specific enhancer factor 2B
6c9l_C	1e-16	12	65	2	55	Myocyte-specific enhancer factor 2B
6c9l_D	1e-16	12	65	2	55	Myocyte-specific enhancer factor 2B
6c9l_E	1e-16	12	65	2	55	Myocyte-specific enhancer factor 2B
6c9l_F	1e-16	12	65	2	55	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020982823.1	7e-75	floral homeotic protein AGAMOUS isoform X1
Refseq	XP_020982824.1	7e-75	floral homeotic protein AGAMOUS isoform X2
Swissprot	Q93XH4	7e-45	MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBL	A0A4D8ZLN6	9e-88	A0A4D8ZLN6_SALSN; MADS-box transcription factor, plant
STRING	EMT23538	3e-73	(Aegilops tauschii)

Publications ? help Back to Top
Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development. Plant Mol. Biol., 2001. 45(5): p. 541-53 [PMID:11414613] Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]