PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100246310051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MIKC_MADS
Protein Properties Length: 285aa    MW: 31888.8 Da    PI: 11.0581
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100246310051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.54.3e-291966148
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                                  krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+ly+
  Ote100246310051|100246310051 19 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYD 66
                                  79********************************************95 PP
2K-box67.25.8e-231862701599
                         K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                                   ++  q  ++  +  + Lq    ++lG++++ + lk+L+++e+++e++++++R+kKnell+++ie +qk+e el+++n+ Lr
  Ote100246310051|100246310051 186 QQAAQTNTRYSSFKQVLQLATSQMLGDGVTGMALKDLKSVESKVERAISRVRAKKNELLFAEIELMQKRELELHNANMFLR 266
                                   4455555566666788999999*********************************************************** PP

                         K-box  96 kkle 99 
                                   +kl+
  Ote100246310051|100246310051 267 SKLK 270
                                   *987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.3421171IPR002100Transcription factor, MADS-box
SMARTSM004325.7E-361170IPR002100Transcription factor, MADS-box
CDDcd002651.13E-351266No hitNo description
SuperFamilySSF554555.89E-271271IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-301333IPR002100Transcription factor, MADS-box
PfamPF003192.6E-252065IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-303348IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-304869IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.334185277IPR002487Transcription factor, K-box
PfamPF014865.7E-16199269IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MAFPDQESRK NGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFST  60
RGRLYDIIRI SINHNAVKSS FAGKEEIFNL IKPRRLGFSK LLIQSAPEGN KGGRRRVLTA  120
GRKGEATRGG MAHQPIILWD LVPAWMRAAN HVRATIDRYK KATADSSNAV STSEANTQVI  180
LPARSQQAAQ TNTRYSSFKQ VLQLATSQML GDGVTGMALK DLKSVESKVE RAISRVRAKK  240
NELLFAEIEL MQKRELELHN ANMFLRSKLK SGLFSWEGKR DDGGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P9e-171265255Myocyte-specific enhancer factor 2B
1tqe_Q9e-171265255Myocyte-specific enhancer factor 2B
1tqe_R9e-171265255Myocyte-specific enhancer factor 2B
1tqe_S9e-171265255Myocyte-specific enhancer factor 2B
6c9l_A9e-171265255Myocyte-specific enhancer factor 2B
6c9l_B9e-171265255Myocyte-specific enhancer factor 2B
6c9l_C9e-171265255Myocyte-specific enhancer factor 2B
6c9l_D9e-171265255Myocyte-specific enhancer factor 2B
6c9l_E9e-171265255Myocyte-specific enhancer factor 2B
6c9l_F9e-171265255Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ408723e-32AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBLA0A4D8ZLN64e-76A0A4D8ZLN6_SALSN; MADS-box transcription factor, plant