PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100245430211 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | TALE | ||||||||
Protein Properties | Length: 190aa MW: 22440.9 Da PI: 9.9421 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.9 | 8.1e-09 | 147 | 179 | 23 | 55 |
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 +yps++e+ L + +gL+++q+k+WF N+R ++ Ote100245430211|100245430211 147 PYPSEAEKIALGECTGLEQKQIKNWFINQRKRH 179 8*****************************885 PP | |||||||
2 | ELK | 22.6 | 2.4e-08 | 99 | 116 | 5 | 22 |
ELK 5 qLlrKYsgyLgsLkqEFs 22 + +rKYsgy gs+kqE++ Ote100245430211|100245430211 99 EIMRKYSGYFGSVKQEIM 116 559**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03790 | 5.9E-7 | 31 | 52 | IPR005540 | KNOX1 |
Pfam | PF03791 | 2.6E-5 | 51 | 78 | IPR005541 | KNOX2 |
SMART | SM01188 | 0.0035 | 95 | 116 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.6E-5 | 101 | 116 | IPR005539 | ELK domain |
SMART | SM00389 | 1.5E-10 | 118 | 186 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 11.321 | 119 | 182 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.41E-10 | 122 | 183 | No hit | No description |
SuperFamily | SSF46689 | 5.13E-17 | 124 | 186 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-24 | 126 | 184 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.2E-16 | 139 | 178 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MNMMPPLTLP FSHPNLPSAS SPMSSSEQFQ RQKITDHPHF HRLLIAYVNC QKYEQELLRP 60 LQEATLFLAT IERHLIRLSG RNGEEEVECI AEEERVKSEI MRKYSGYFGS VKQEIMMKKK 120 IRNKAEKLPK QATQHLLNWW ATHHHWPYPS EAEKIALGEC TGLEQKQIKN WFINQRKRHW 180 KPSKNLISLN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021889118.1 | 3e-47 | homeobox protein SBH1 | ||||
Swissprot | P46608 | 5e-42 | HSBH1_SOYBN; Homeobox protein SBH1 | ||||
TrEMBL | A0A1U8PGR1 | 3e-45 | A0A1U8PGR1_GOSHI; homeobox protein SBH1-like | ||||
STRING | XP_010555877.1 | 2e-43 | (Tarenaya hassleriana) | ||||
STRING | EOY28807 | 3e-43 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA753 | 24 | 80 |
Publications ? help Back to Top | |||
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