PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100245370051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ARR-B
Protein Properties Length: 630aa    MW: 68880.6 Da    PI: 6.4249
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100245370051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.63.6e-25146195151
                       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                                   kpr++W+ eLH++Fv av+qL G+ekA+Pk+il+lm+v+gLt+e+v+SHLQ
  Ote100245370051|100245370051 146 KPRVVWSIELHRKFVAAVNQL-GIEKAVPKRILDLMNVEGLTRENVASHLQ 195
                                   79*******************.***************************** PP
2Response_reg55.92.5e-1927735109
                                   HHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                  Response_reg  35 alellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                                   al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+g+++++ + +  Ga d+l+Kp+ +eel++
  Ote100245370051|100245370051   2 ALKMLRENKdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDPKLVMKGITHGACDYLVKPVRIEELRN 77 
                                   67777666667*******************87754.558************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004480.0077179IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011033.358183IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23005.0E-29297No hitNo description
CDDcd001567.73E-21282No hitNo description
PfamPF000726.4E-16278IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521722.56E-24291IPR011006CheY-like superfamily
PROSITE profilePS5129411.15143202IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-24143195IPR009057Homeodomain-like
SuperFamilySSF466893.23E-15144196IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-21146196IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MALKMLRENK DRFDLVISDV HMPDMDGFKL LELVGLEMDL PVIMLSANGD PKLVMKGITH  60
GACDYLVKPV RIEELRNIWQ HVVRKKKTEP KSHNNSGDQG NGNQSSGEGY GSQADRNGKF  120
NRKRKDEEDL GEDNGNESED PSSQKKPRVV WSIELHRKFV AAVNQLGIEK AVPKRILDLM  180
NVEGLTRENV ASHLQIVLDI HARLRSEQHA NTSSGLELDK YRLYLKRISS VASQQANMVA  240
ALGVKDSPFM RAGPFEGLGD FRNLAGQGRF GNAALSHYTT GSMLGRLNSP NLNLHSLAPS  300
TLIQPNHAQN ITNSINGLGK VLTPTNQSPS LFQGIPSSFE LDQLQQNKSS TGIAGFSSID  360
NSRLQNAANK FTEQGAAISS SSNILNSTAS NPMVLHGNYQ QTISGGGFGN QSSQNIASES  420
YNIGVNSSSN FLGTRTFQSS TTQPPPLLST EAFHNNLSVS TARDNSYPSA PYIQKTPIDI  480
SSATMTLPLD EVHVQNISDS PSQRWGEQGH NYSRNSTTTF VSLNTHIPGN GGVSPLDQDS  540
GIINIMNGRL GGDASTLMQQ NENDKLVTES RAMSDDNFLS EQHKLQNAFP PRSYDPLDAM  600
MLHSMIKREQ DDSIANCDFG FDDYSFGSGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-21142195154ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084015.10.0two-component response regulator ARR12
SwissprotQ6K8X61e-105ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A4D8ZTF50.0A0A4D8ZTF5_SALSN; Two-component response regulator ARR-B family
STRINGXP_009757804.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]