PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100245170021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bZIP

Protein Properties

Length: 371aa MW: 39505.5 Da PI: 6.1857

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100245170021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	75.3	7.9e-24	284	346	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+e+k+++rkq+NRe+ArrsR+RK+ae+eeL+ kv++L +eN++L++e+++l +e++k +se+ Ote100245170021\|100245170021 284 EREIKKQKRKQSNRESARRSRLRKQAECEELQHKVETLNSENHSLRDEIQRLAEECEKITSEN 346 89**********************************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	2.2E-31	25	120	IPR012900	G-box binding protein, multifunctional mosaic region
Pfam	PF16596	7.3E-9	137	255	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.0E-19	279	343	No hit	No description
SMART	SM00338	3.7E-23	284	348	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.4E-21	284	346	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	13.288	286	349	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.75E-12	287	343	No hit	No description
CDD	cd14702	8.69E-26	289	339	No hit	No description
PROSITE pattern	PS00036	0	291	306	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MTVGVNFPFR ILPYVKLGSA TASLMGTGEE STQSKSSKPP SSSQEAPVTP TTPMYPDWSS 60 SMQAFYGPGA APPFFASTVA SPPPHPYLWG GQHPMMAPYG TPVPYPAIYP PGGIYAHPNM 120 ATTPGAIHGT AESEGKERSS SKKTKGPSAN HNMIGGKTLE GGKAASGSGN DYGTHSAESG 180 SEGSSDASDE NNNQDFSAAK KGSFDQMLVD GANAQNNGIP TNFPNSIPGN PVGTVPATNL 240 NIGMDLWNNT HAGSGPMKLR PNSVGVTQGI PPSGMMNDQW TPDEREIKKQ KRKQSNRESA 300 RRSRLRKQAE CEELQHKVET LNSENHSLRD EIQRLAEECE KITSENNSMK EELSRLGVDS 360 DTHTGGDEGN C

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MTVGVNFPFR ILPYVKLGSA TASLMGTGEE STQSKSSKPP SSSQEAPVTP TTPMYPDWSS  60
SMQAFYGPGA APPFFASTVA SPPPHPYLWG GQHPMMAPYG TPVPYPAIYP PGGIYAHPNM  120
ATTPGAIHGT AESEGKERSS SKKTKGPSAN HNMIGGKTLE GGKAASGSGN DYGTHSAESG  180
SEGSSDASDE NNNQDFSAAK KGSFDQMLVD GANAQNNGIP TNFPNSIPGN PVGTVPATNL  240
NIGMDLWNNT HAGSGPMKLR PNSVGVTQGI PPSGMMNDQW TPDEREIKKQ KRKQSNRESA  300
RRSRLRKQAE CEELQHKVET LNSENHSLRD EIQRLAEECE KITSENNSMK EELSRLGVDS  360
DTHTGGDEGN C

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269\|PubMed:1373374, ECO:0000269\|PubMed:22718771}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097214.1	0.0	G-box-binding factor 1-like isoform X1
Swissprot	P42774	2e-97	GBF1_ARATH; G-box-binding factor 1
TrEMBL	A0A4D9BV77	0.0	A0A4D9BV77_SALSN; Plant G-box-binding factor
STRING	Migut.L00297.1.p	1e-155	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3780	24	46

Publications ? help Back to Top
Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development. Mol Plant, 2013. 6(6): p. 1758-68 [PMID:24157607] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Karumuri S,Bandopadhyay R In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana. Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9 [PMID:25630103] Smykowski A,Zimmermann P,Zentgraf U CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis. Plant Physiol., 2016. 170(2): p. 1164-7 [PMID:26826725] Smykowski A,Fischer SM,Zentgraf U Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1. Plants (Basel), 2015. 4(3): p. 691-709 [PMID:27135347] Giri MK, et al. GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana. Plant J., 2017. 91(5): p. 802-815 [PMID:28622438]