PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100244230061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 678aa    MW: 75593.9 Da    PI: 6.7726
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100244230061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.6e-06139158524
                                   --SGGGGTS--TTTTT-SS- CS
                       zf-CCCH   5 lCrffartGtCkyGdrCkFa 24 
                                   +C+f +  G C+yG  C+Fa
  Ote100244230061|100244230061 139 ECPFLSNEGPCPYGLACRFA 158
                                   6******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.577100126IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.24139164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.701.7E-51296551IPR013785Aldolase-type TIM barrel
SuperFamilySSF513951.41E-42300580No hitNo description
CDDcd028014.51E-66300547No hitNo description
PfamPF012072.5E-28303550IPR001269tRNA-dihydrouridine synthase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MEDPVAIEDS SSYVVAAETA LLPQPHPTAA ELVAKAIAPV KRDFLRPPPD RTRDSGVGKN  60
PEAQEISQND SASAPITKEK KSKRQLKRER RQEQSSVLHI CPAVAKTGKV SSCAYNDKCR  120
YSHDLEAFKA QKPADLDGEC PFLSNEGPCP YGLACRFAGT HKDDNGEVAK ANGDRITSEM  180
NGLTKDVQKL LWKNKMKFPK ADAALKHLDL AALGSSAEVS EENKSDKADD DLRPPKKTKC  240
TTEGTFALPL DGGHTLHEED AGESCKLNEP ESITRNIVED NDKCLKLHPR ERKIIDFRDK  300
LYLAPLTTVG NLPFRRVCKV LGVDVTCGEM AMCTNLLQFD FEIVQGQASE WALLRRHSLE  360
DFFGVQICGA YPDTVARTVE LIEQNCTVDX XXXXXXXXXX XXXXXGAGSA LLTKPMRMKS  420
VVEASSMAIS TPVTIKVFVV LVRTGYFEGK NRIDSLIADM GNWGATSVTV HGRTRQQRYS  480
KLADWDYIYQ CARAAPPNLQ VLGNGDVFSY VDWNTHKSDC PELSTCMIAR GALVKPWIFT  540
EIKEQRHWDI SSGERLNILK DYVRFGLQHW GSDSKGMQTC SFLSADEKLG VETTRHFLLE  600
WLSYTCRYIP VGLLDVIPQK INWRPSSYFG RDDLETLMAS DSAADWIRIS EMLLGKVPPG  660
FTFSPKHKSN AYDRAENG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A3e-1329755627266tRNA-dihydrouridine synthase B
6ei9_B3e-1329755627266tRNA-dihydrouridine synthase B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088544.10.0tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X2
SwissprotQ9T0J60.0DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLA0A2G9G3E20.0A0A2G9G3E2_9LAMI; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGMigut.B00123.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80391923
Publications ? help Back to Top
  1. Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R
    Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography.
    Proteomics, 2004. 4(2): p. 397-406
    [PMID:14760709]