PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100244210081

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

GRAS

Protein Properties

Length: 580aa MW: 65696.9 Da PI: 6.2342

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100244210081	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	269.1	1.4e-82	207	578	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseel 78 l++ Ll cAe vs+++ e+a ++L++ + + +g+++qRl++yf +AL +++a+ ++ + k l+ ++ ++ + + ++ Ote100244210081\|100244210081 207 LIQNLLCCAEKVSDNQYERALKFLKECDKDSLRTGTAIQRLVFYFSRALIEKIANeTGRIIPKDLEENHVDPVEsvLTPNM 287 5799*************************************************33333344444444433332233333 PP GRAS 79 aalkl...fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgsk 155 + l f++ P +++ l+ qaIl+ ++ +++vH iD++i G+QW+ L+qaLa+ +e+p +l iT+vg g k Ote100244210081\|100244210081 288 N---LlisFHKEHPHSQVTKLVGVQAILDHLKDAKKVHMIDLQIRSGVQWIILMQALAAPNENPVlHLTITAVGT---GWK 362 3...2456**********************************************98866656******...78 PP GRAS 156 eeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsP 236 +eetg++L+ fAe+l+++f f+++v+++l +l+ + ++v+ +E++aV + l +++ + +++ d+++ ++k+++P Ote100244210081\|100244210081 363 SVMEETGRQLTVFAETLNLKFTFRTVVVEDLFELNQSLFDVDADESVAVYAPYTLATFV---GRVKE-LDHLMGVMKDMNP 439 ********************************************************9...44444.889****** PP GRAS 237 kvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWre 317 v++v+e ea++ns++F rf+e+l ++ a+fdsle + +++ r+k E ++g +i+n++a+ g++r+ rh + + Wr+ Ote100244210081\|100244210081 440 CVMIVTELEANCNSPTFIGRFVESLFFFGAFFDSLEDCFKNDEGSRVKAESTWFGSSIRNILAADGEKRELRHVNINVWRA 520 ***************************************************************************** PP GRAS 318 rleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++ G+ +++ls + +qa l l+ + + ++ + ++l+lgWk+ pL s+SaW+ Ote100244210081\|100244210081 521 FFTRIGLVEMELSVSSLDQACLGLQSLPyGSSCTLYRDGKCLTLGWKGTPLSSLSAWK 578 ***********************9888899*********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	38.196	181	557	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.9E-80	207	578	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence Send to blast
MQHLLHLSVT ISPYLTGCFN IIVKDVEPIL HLVQHKSFDI ISSFHSSDKM NKMFHGENPD 60 FAGVSEDRVD GQDEQGFTTS HHQIYYQQRI KEFVDDSHIE AVSPYQSFEI RGLIDHKKRQ 120 RHVFSTDSFE VLRKYGGRRL NLDVKPSSTS SVVKSAPTSS TETTIRVAAE KFIQSLPDSN 180 NELSMLSHPY PSYLLAYSRE NSQEVQLIQN LLCCAEKVSD NQYERALKFL KECDKDSLRT 240 GTAIQRLVFY FSRALIEKIA NETGRIIPKD LEENHVDPVE SVLTPNMNLL ISFHKEHPHS 300 QVTKLVGVQA ILDHLKDAKK VHMIDLQIRS GVQWIILMQA LAAPNENPVL HLTITAVGTG 360 WKSVMEETGR QLTVFAETLN LKFTFRTVVV EDLFELNQSL FDVDADESVA VYAPYTLATF 420 VGRVKELDHL MGVMKDMNPC VMIVTELEAN CNSPTFIGRF VESLFFFGAF FDSLEDCFKN 480 DEGSRVKAES TWFGSSIRNI LAADGEKREL RHVNINVWRA FFTRIGLVEM ELSVSSLDQA 540 CLGLQSLPYG SSCTLYRDGK CLTLGWKGTP LSSLSAWKFQ

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence Send to blast

MQHLLHLSVT ISPYLTGCFN IIVKDVEPIL HLVQHKSFDI ISSFHSSDKM NKMFHGENPD  60
FAGVSEDRVD GQDEQGFTTS HHQIYYQQRI KEFVDDSHIE AVSPYQSFEI RGLIDHKKRQ  120
RHVFSTDSFE VLRKYGGRRL NLDVKPSSTS SVVKSAPTSS TETTIRVAAE KFIQSLPDSN  180
NELSMLSHPY PSYLLAYSRE NSQEVQLIQN LLCCAEKVSD NQYERALKFL KECDKDSLRT  240
GTAIQRLVFY FSRALIEKIA NETGRIIPKD LEENHVDPVE SVLTPNMNLL ISFHKEHPHS  300
QVTKLVGVQA ILDHLKDAKK VHMIDLQIRS GVQWIILMQA LAAPNENPVL HLTITAVGTG  360
WKSVMEETGR QLTVFAETLN LKFTFRTVVV EDLFELNQSL FDVDADESVA VYAPYTLATF  420
VGRVKELDHL MGVMKDMNPC VMIVTELEAN CNSPTFIGRF VESLFFFGAF FDSLEDCFKN  480
DEGSRVKAES TWFGSSIRNI LAADGEKREL RHVNINVWRA FFTRIGLVEM ELSVSSLDQA  540
CLGLQSLPYG SSCTLYRDGK CLTLGWKGTP LSSLSAWKFQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-34	214	577	26	378	Protein SCARECROW
5b3h_A	1e-34	214	577	25	377	Protein SCARECROW
5b3h_D	1e-34	214	577	25	377	Protein SCARECROW
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022868730.1	0.0	DELLA protein RGL1-like
TrEMBL	A0A2G9I6V8	1e-166	A0A2G9I6V8_9LAMI; Uncharacterized protein
STRING	Migut.G00048.1.p	1e-157	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3427	21	49