PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100244210021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

GRAS

Protein Properties

Length: 524aa MW: 59378.7 Da PI: 8.9405

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100244210021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	246.8	8.3e-76	149	515	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 + Ll+cAe vs+++ + a++lLa+ ++l+ ++ + ++Rl+ yf+eAL++++ r++ + + +++t++ + ++ +al Ote100244210021\|100244210021 149 LQDLLSCAEKVSNHHYHSASRLLAECHNLSFSRTNVIKRLVYYFAEALNEKIDRETGRYTGKYMVKKTAPLEPTTPNSALA 229 689*************************************************777777777777777888999999999 PP GRAS 83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetg 162 f++ P++++s ++ q ++ v++++rvHiiD+++ GlQ + L+qaL++Rpe+p +l+iT+v+ +s+ ++ee g Ote100244210021\|100244210021 230 SFHQKIPLHQISLFASIQEVVHHVSSCKRVHIIDLEMRCGLQQVILMQALTARPESPLkHLKITAVAI---NSSLMIEEAG 307 **************************************************65544****9...579*** PP GRAS 163 erLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvve 243 rL+ +A++l+++f+f+v+ +++ +l++++ + + +E+ +V + +l+ + +++ +les ++k++k+++P v++++e Ote100244210021\|100244210021 308 VRLRALAKSLNLNFSFHVMKLEDMLNLQPNTPHRSLDEKCIVYASQALKFMIAKPNQLES----LMKVIKKINPCVMIMCE 384 **************9999*****99999************99999999....************* PP GRAS 244 qeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324 e ++ns+ F++rf+eal yy a fd++e + ++ er++vE ll++ ++ va+eg+err r + Wre + ++G+ Ote100244210021\|100244210021 385 PEGNLNSPVFVNRFVEALFYYGAHFDCVEDCM-KNGAERMFVESNLLSPLLRTTVAAEGEERRSRIVGINVWREFFAKFGM 464 ************************9996.6779**************************************** PP GRAS 325 kpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 + +ls a + a+++l++++ + ++ + +sl+ Wk+ p +s+SaW+ Ote100244210021\|100244210021 465 VERELSMLALDHASMILNMFEcRRSCTLGLNGNSLIVRWKGTPTTSLSAWK 515 *****************9999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	34.804	122	494	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.9E-73	149	515	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence Send to blast
MSTVIPSNDF GSIQVSKDAA DPSKEVQFLA HIGNRYLDIV SSPFQAYGEE LSKVPYFRSP 60 KSRQHKGKKL YGIPSTSMEI LRNHASKFSR ENEKKIEESN PLSPLSTNHI IEMAAVNFIQ 120 SKSDKLSPLS HPYASTILGL SNDEDVQLLQ DLLSCAEKVS NHHYHSASRL LAECHNLSFS 180 RTNVIKRLVY YFAEALNEKI DRETGRYTGK YMVKKTAPLE PTTPNSALAS FHQKIPLHQI 240 SLFASIQEVV HHVSSCKRVH IIDLEMRCGL QQVILMQALT ARPESPLKHL KITAVAINSS 300 LMIEEAGVRL RALAKSLNLN FSFHVMKLED MLNLQPNTPH RSLDEKCIVY ASQALKFMIA 360 KPNQLESLMK VIKKINPCVM IMCEPEGNLN SPVFVNRFVE ALFYYGAHFD CVEDCMKNGA 420 ERMFVESNLL SPLLRTTVAA EGEERRSRIV GINVWREFFA KFGMVERELS MLALDHASMI 480 LNMFECRRSC TLGLNGNSLI VRWKGTPTTS LSAWKFQRMH EFRI

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence Send to blast

MSTVIPSNDF GSIQVSKDAA DPSKEVQFLA HIGNRYLDIV SSPFQAYGEE LSKVPYFRSP  60
KSRQHKGKKL YGIPSTSMEI LRNHASKFSR ENEKKIEESN PLSPLSTNHI IEMAAVNFIQ  120
SKSDKLSPLS HPYASTILGL SNDEDVQLLQ DLLSCAEKVS NHHYHSASRL LAECHNLSFS  180
RTNVIKRLVY YFAEALNEKI DRETGRYTGK YMVKKTAPLE PTTPNSALAS FHQKIPLHQI  240
SLFASIQEVV HHVSSCKRVH IIDLEMRCGL QQVILMQALT ARPESPLKHL KITAVAINSS  300
LMIEEAGVRL RALAKSLNLN FSFHVMKLED MLNLQPNTPH RSLDEKCIVY ASQALKFMIA  360
KPNQLESLMK VIKKINPCVM IMCEPEGNLN SPVFVNRFVE ALFYYGAHFD CVEDCMKNGA  420
ERMFVESNLL SPLLRTTVAA EGEERRSRIV GINVWREFFA KFGMVERELS MLALDHASMI  480
LNMFECRRSC TLGLNGNSLI VRWKGTPTTS LSAWKFQRMH EFRI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-26	148	515	4	375	GRAS family transcription factor containing protein, expressed

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022868730.1	1e-148	DELLA protein RGL1-like
TrEMBL	A0A4D8ZRN2	0.0	A0A4D8ZRN2_SALSN; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3427	21	49