PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100244090001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 88aa MW: 9385.63 Da PI: 8.5487 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.6 | 1.4e-22 | 3 | 50 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i+n++n qvtfskRr+g++KKA+ELS+LC+ae av++fs+ +k + + Ote100244090001|100244090001 3 KIQNDTNLQVTFSKRRAGVFKKASELSTLCGAESAVVVFSPGNKPHSF 50 599**************************************9987766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.039 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.19E-32 | 1 | 68 | No hit | No description |
SMART | SM00432 | 2.3E-23 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.31E-23 | 2 | 68 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.4E-25 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-9 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-9 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MVKIQNDTNL QVTFSKRRAG VFKKASELST LCGAESAVVV FSPGNKPHSF GHPDVETVAN 60 RFLQASSGEA PPRTTADHLI MAQGEAAM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088150.1 | 2e-35 | agamous-like MADS-box protein AGL18 | ||||
Swissprot | Q9FKK2 | 2e-25 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A4D8YHH1 | 3e-36 | A0A4D8YHH1_SALSN; Uncharacterized protein | ||||
STRING | Solyc01g106730.1.1 | 4e-29 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Publications ? help Back to Top | |||
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