PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100243710041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

FAR1

Protein Properties

Length: 628aa MW: 72418.1 Da PI: 4.7564

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100243710041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.3	1.6e-15	244	318	1	80
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtk 80 +fYn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ ++r+etrtgC a++++++ ++++w++++ Ote100243710041\|100243710041 244 SFYNCYAKELGFGIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAC-----TRRKETRTGCLAMIRLRLVESNRWRLDE 318 5***************************************98776.....8999******************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-13	244	318	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.753	510	546	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.7E-5	517	542	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.3E-5	521	548	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 628 aa Download sequence Send to blast
MADAVFSPTA DGLSPNSGIE ITLVIFREIC ADANLLANFD SNGVFQPTVN IVLSQFKSSL 60 HKAYRLVSYY EINILFVVAL LLVPDTLTPI LFLFLEDMLD DEGEEGFKIE ADDHGNEDSK 120 MLKHKGNDLE DAFQQLLGIE RANLETNGEH VLGIHNADLQ DESEHVLEFE RNGHERNCDQ 180 MLEIXXXXXX XXXXXXXXXX GNDIETVTDT GSLVTIAPTD HTVGKSYLQP VEGMEFESYD 240 DAYSFYNCYA KELGFGIRVK SSWTKRNSKE KRGAVLCCNC EGFKTMKEAC TRRKETRTGC 300 LAMIRLRLVE SNRWRLDERI REKIGEAGES EIFQTVLNRT VYNSMKIEEF EAGWEEMIQH 360 FAIRDNEWLH SLYDDRERWA PVYLKNSIFS GIFTYQPGEY TTPFFHGYIH DQMTWSEFFK 420 VCESLQQKMI QREDLADIES KEFTPVLRTR CSYEMQVSDM YTKEIFVKFQ EEVALVPGCF 480 TVTQFHVNGP VITYIVKEQD GTGSREANAF EVVYDKIGME IRCICCCFSF RGYLCRHALT 540 VLKYNGVDEI PSQYILMRWR KDIKRLYIPD LGSNNIDISN PVQWYEHLYR HAMQVVAEGM 600 ASQDHQSVAW QALKESLNKV RLAAEKPV

Sequence ? help Back to Top

Protein Sequence Length: 628 aa Download sequence Send to blast

MADAVFSPTA DGLSPNSGIE ITLVIFREIC ADANLLANFD SNGVFQPTVN IVLSQFKSSL  60
HKAYRLVSYY EINILFVVAL LLVPDTLTPI LFLFLEDMLD DEGEEGFKIE ADDHGNEDSK  120
MLKHKGNDLE DAFQQLLGIE RANLETNGEH VLGIHNADLQ DESEHVLEFE RNGHERNCDQ  180
MLEIXXXXXX XXXXXXXXXX GNDIETVTDT GSLVTIAPTD HTVGKSYLQP VEGMEFESYD  240
DAYSFYNCYA KELGFGIRVK SSWTKRNSKE KRGAVLCCNC EGFKTMKEAC TRRKETRTGC  300
LAMIRLRLVE SNRWRLDERI REKIGEAGES EIFQTVLNRT VYNSMKIEEF EAGWEEMIQH  360
FAIRDNEWLH SLYDDRERWA PVYLKNSIFS GIFTYQPGEY TTPFFHGYIH DQMTWSEFFK  420
VCESLQQKMI QREDLADIES KEFTPVLRTR CSYEMQVSDM YTKEIFVKFQ EEVALVPGCF  480
TVTQFHVNGP VITYIVKEQD GTGSREANAF EVVYDKIGME IRCICCCFSF RGYLCRHALT  540
VLKYNGVDEI PSQYILMRWR KDIKRLYIPD LGSNNIDISN PVQWYEHLYR HAMQVVAEGM  600
ASQDHQSVAW QALKESLNKV RLAAEKPV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073396.1	1e-169	protein FAR1-RELATED SEQUENCE 8 isoform X1
Refseq	XP_020548549.1	1e-169	protein FAR1-RELATED SEQUENCE 8 isoform X2
Refseq	XP_020548550.1	1e-169	protein FAR1-RELATED SEQUENCE 8 isoform X2
Swissprot	Q9S793	3e-94	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A103XW92	0.0	A0A103XW92_CYNCS; FAR1 DNA binding domain-containing protein
STRING	XP_009631083.1	1e-137	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]