PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100243370261

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

G2-like

Protein Properties

Length: 346aa MW: 38762.2 Da PI: 6.996

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100243370261	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.6	1.2e-32	182	236	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LH+rFve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR Ote100243370261\|100243370261 182 KARIRWTQDLHDRFVECVNRLGGPDKATPKQILKLMNTEGLTIFHVKSHLQKYRN 236 68****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.625	179	239	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-29	179	237	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.94E-17	180	236	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-25	182	237	IPR006447	Myb domain, plants
Pfam	PF00249	7.1E-9	186	235	IPR001005	SANT/Myb domain
Pfam	PF14379	1.6E-10	269	309	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MKGIQHNYGS YTSEFAPDFP NFFQQSFPPQ QQHASNQSAP SNSFQQANSS GTIIGRIGSP 60 ASAFCATEIA MGLSHYDFPE SCSQQSKNLY SSLHQPGNGL FGESTARNQF SNLSEREKIL 120 HLKHKLLGDL DDSDRGSPFA SFDANHDHEV SHNLYAPHLV PMKQFGRPIN SSTSPGAVSS 180 HKARIRWTQD LHDRFVECVN RLGGPDKATP KQILKLMNTE GLTIFHVKSH LQKYRNAKHI 240 PESVEAAGKA ENKTDMDRAT QFDIKTGVHL KEALQLQLDV QRRLHEQLEM RIEEQSQRLK 300 MMFDQQQKTN NNKCANANSL STAVEDPEVL VLDASDDDMI FPSKIS

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MKGIQHNYGS YTSEFAPDFP NFFQQSFPPQ QQHASNQSAP SNSFQQANSS GTIIGRIGSP  60
ASAFCATEIA MGLSHYDFPE SCSQQSKNLY SSLHQPGNGL FGESTARNQF SNLSEREKIL  120
HLKHKLLGDL DDSDRGSPFA SFDANHDHEV SHNLYAPHLV PMKQFGRPIN SSTSPGAVSS  180
HKARIRWTQD LHDRFVECVN RLGGPDKATP KQILKLMNTE GLTIFHVKSH LQKYRNAKHI  240
PESVEAAGKA ENKTDMDRAT QFDIKTGVHL KEALQLQLDV QRRLHEQLEM RIEEQSQRLK  300
MMFDQQQKTN NNKCANANSL STAVEDPEVL VLDASDDDMI FPSKIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-22	182	239	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-22	182	239	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-22	182	239	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-22	182	239	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-22	182	239	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-22	182	239	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-22	182	239	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-22	182	239	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011075159.1	1e-127	myb family transcription factor PHL5 isoform X1
TrEMBL	A0A4D9BFT7	1e-146	A0A4D9BFT7_SALSN; Two-component response regulator ARR-B family
STRING	Migut.J01825.1.p	1e-102	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2491	24	58