PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100243370051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 316aa MW: 35158.2 Da PI: 7.5788

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100243370051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.5e-12	263	308	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ L+el+P+ +k + a++L +AveYIk Lq Ote100243370051\|100243370051 263 SIAERVRRTRISERMRMLQELVPNM----DKQTNTADMLDLAVEYIKGLQ 308 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.64	257	307	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.5E-15	260	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.63E-11	261	310	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.9E-14	262	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-12	263	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.4E-9	263	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MYDDSHASFS DPSPISPLQK QEQQKLQLME SDYRQQSESS GLLRFRSAPT SLLENLTEKK 60 TKSSKLGVSR FCSDEANGMK MAENEYSDDG CNEGSGNNGF GGMNSPLPRQ HPRQSVAQMG 120 YRIGSSLMRQ NSSPAGLISL HSSQNGYSEV QGIVNWRVVD GDGNIDLSPT PSSIFKNHTN 180 LSSMAPSLLP RISEVENENG GPNSNGDNLF FNSGFPLNDS SYSSDPKLER FDHPVNMLSR 240 HSSQDTVPCK VRAKRGCATH PRSIAERVRR TRISERMRML QELVPNMDKQ TNTADMLDLA 300 VEYIKGLQKQ YKVMQI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011075183.1	1e-86	transcription factor bHLH130-like
TrEMBL	A0A0H3Y8U7	1e-114	A0A0H3Y8U7_SALMI; Basic helix-loop-helix transcription factor
STRING	PGSC0003DMT400021062	2e-64	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5194	24	37